A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.4
nTPM
Monaco:
37.8
nTPM
Schmiedel:
110.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.4
HPA sample
nTPM
Memory B-cell nTPM: 4.4
Samples: 6
Max nTPM: 7.5
Min nTPM: 2.7
P10809_1017
3.8
P10809_1025
7.5
P10809_1044
6.2
P10809_1063
3.0
P10809_1092
3.4
P10809_1105
2.7
Naive B-cell nTPM: 3.5
Samples: 6
Max nTPM: 4.9
Min nTPM: 2.8
P10809_1011
4.1
P10809_1029
3.4
P10809_1048
3.1
P10809_1067
2.8
P10809_1091
4.9
P10809_1104
2.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 27.0
Samples: 4
Max nTPM: 36.6
Min nTPM: 19.3
RHH5310_R3677
19.3
RHH5218_R3590
36.6
RHH5247_R3619
29.9
RHH5276_R3648
22.3
Naive B-cell nTPM: 36.8
Samples: 4
Max nTPM: 52.0
Min nTPM: 28.2
RHH5308_R3675
28.2
RHH5216_R3588
37.5
RHH5245_R3617
52.0
RHH5274_R3646
29.6
Non-switched memory B-cell nTPM: 31.0
Samples: 4
Max nTPM: 38.1
Min nTPM: 26.6
RHH5309_R3676
26.6
RHH5217_R3589
27.8
RHH5246_R3618
38.1
RHH5275_R3647
31.6
Plasmablast nTPM: 37.8
Samples: 4
Max nTPM: 46.3
Min nTPM: 25.6
RHH5312_R3679
38.1
RHH5220_R3592
46.3
RHH5249_R3621
41.1
RHH5278_R3650
25.6
Switched memory B-cell nTPM: 35.6
Samples: 4
Max nTPM: 42.8
Min nTPM: 30.2
RHH5311_R3678
35.5
RHH5219_R3591
42.8
RHH5248_R3620
30.2
RHH5277_R3649
34.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.9
Schmiedel sample id
TPM
Naive B-cell TPM: 110.9
Samples: 91
Max TPM: 142.5
Min TPM: 84.4
B_CELL_NAIVE_1
142.5
B_CELL_NAIVE_2
130.4
B_CELL_NAIVE_3
130.0
B_CELL_NAIVE_4
129.5
B_CELL_NAIVE_5
127.0
B_CELL_NAIVE_6
126.6
B_CELL_NAIVE_7
124.6
B_CELL_NAIVE_8
124.0
B_CELL_NAIVE_9
121.7
B_CELL_NAIVE_10
121.2
B_CELL_NAIVE_11
120.8
B_CELL_NAIVE_12
120.0
B_CELL_NAIVE_13
119.3
B_CELL_NAIVE_14
118.8
B_CELL_NAIVE_15
118.6
B_CELL_NAIVE_16
118.5
B_CELL_NAIVE_17
118.2
B_CELL_NAIVE_18
117.5
B_CELL_NAIVE_19
116.9
B_CELL_NAIVE_20
116.7
B_CELL_NAIVE_21
116.3
B_CELL_NAIVE_22
116.3
B_CELL_NAIVE_23
115.7
B_CELL_NAIVE_24
115.5
B_CELL_NAIVE_25
115.4
B_CELL_NAIVE_26
115.2
B_CELL_NAIVE_27
114.8
B_CELL_NAIVE_28
114.5
B_CELL_NAIVE_29
114.4
B_CELL_NAIVE_30
113.7
B_CELL_NAIVE_31
113.4
B_CELL_NAIVE_32
113.1
B_CELL_NAIVE_33
112.3
B_CELL_NAIVE_34
112.3
B_CELL_NAIVE_35
112.2
B_CELL_NAIVE_36
112.1
B_CELL_NAIVE_37
111.6
B_CELL_NAIVE_38
111.5
B_CELL_NAIVE_39
111.2
B_CELL_NAIVE_40
111.0
B_CELL_NAIVE_41
111.0
B_CELL_NAIVE_42
110.7
B_CELL_NAIVE_43
110.7
B_CELL_NAIVE_44
110.6
B_CELL_NAIVE_45
110.3
B_CELL_NAIVE_46
110.3
B_CELL_NAIVE_47
110.1
B_CELL_NAIVE_48
110.0
B_CELL_NAIVE_49
109.9
B_CELL_NAIVE_50
109.7
B_CELL_NAIVE_51
109.7
B_CELL_NAIVE_52
109.5
B_CELL_NAIVE_53
109.3
B_CELL_NAIVE_54
109.3
B_CELL_NAIVE_55
109.2
B_CELL_NAIVE_56
109.2
B_CELL_NAIVE_57
109.0
B_CELL_NAIVE_58
108.1
B_CELL_NAIVE_59
108.1
B_CELL_NAIVE_60
108.0
B_CELL_NAIVE_61
106.8
B_CELL_NAIVE_62
106.6
B_CELL_NAIVE_63
106.5
B_CELL_NAIVE_64
106.2
B_CELL_NAIVE_65
106.1
B_CELL_NAIVE_66
105.7
B_CELL_NAIVE_67
105.7
B_CELL_NAIVE_68
105.5
B_CELL_NAIVE_69
105.0
B_CELL_NAIVE_70
105.0
B_CELL_NAIVE_71
104.5
B_CELL_NAIVE_72
104.3
B_CELL_NAIVE_73
104.0
B_CELL_NAIVE_74
103.7
B_CELL_NAIVE_75
103.3
B_CELL_NAIVE_76
103.2
B_CELL_NAIVE_77
103.1
B_CELL_NAIVE_78
102.3
B_CELL_NAIVE_79
101.6
B_CELL_NAIVE_80
101.4
B_CELL_NAIVE_81
101.2
B_CELL_NAIVE_82
100.5
B_CELL_NAIVE_83
100.1
B_CELL_NAIVE_84
100.1
B_CELL_NAIVE_85
100.0
B_CELL_NAIVE_86
99.5
B_CELL_NAIVE_87
99.3
B_CELL_NAIVE_88
98.8
B_CELL_NAIVE_89
97.2
B_CELL_NAIVE_90
96.1
B_CELL_NAIVE_91
84.4
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