A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.3
nTPM
Monaco:
59.8
nTPM
Schmiedel:
175.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.3
HPA sample
nTPM
Classical monocyte nTPM: 6.5
Samples: 6
Max nTPM: 7.1
Min nTPM: 4.9
P10809_1003
6.9
P10809_1020
7.0
P10809_1039
4.9
P10809_1058
6.9
P10809_1080
7.1
P10809_1107
6.3
Intermediate monocyte nTPM: 7.4
Samples: 6
Max nTPM: 13.2
Min nTPM: 4.3
P10809_1004
5.7
P10809_1023
4.7
P10809_1042
13.2
P10809_1061
11.9
P10809_1081
4.3
P10809_1108
4.9
Non-classical monocyte nTPM: 9.3
Samples: 5
Max nTPM: 19.7
Min nTPM: 5.7
P10809_1005
6.8
P10809_1053
8.3
P10809_1072
19.7
P10809_1082
6.0
P10809_1109
5.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.8
Monaco sample
nTPM
Classical monocyte nTPM: 44.7
Samples: 4
Max nTPM: 53.7
Min nTPM: 36.1
RHH5313_R3680
46.2
RHH5221_R3593
53.7
RHH5250_R3622
36.1
RHH5279_R3651
42.6
Intermediate monocyte nTPM: 59.8
Samples: 4
Max nTPM: 92.8
Min nTPM: 36.1
RHH5314_R3681
36.1
RHH5222_R3594
60.0
RHH5251_R3623
92.8
RHH5280_R3652
50.2
Non-classical monocyte nTPM: 47.5
Samples: 4
Max nTPM: 51.4
Min nTPM: 40.4
RHH5315_R3682
51.4
RHH5223_R3595
50.2
RHH5252_R3624
47.9
RHH5281_R3653
40.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
175.2
Schmiedel sample id
TPM
Classical monocyte TPM: 134.7
Samples: 91
Max TPM: 163.4
Min TPM: 101.8
MONOCYTES_1
163.4
MONOCYTES_2
163.4
MONOCYTES_3
160.5
MONOCYTES_4
160.0
MONOCYTES_5
159.4
MONOCYTES_6
155.2
MONOCYTES_7
153.4
MONOCYTES_8
153.1
MONOCYTES_9
151.3
MONOCYTES_10
149.0
MONOCYTES_11
148.9
MONOCYTES_12
148.6
MONOCYTES_13
148.4
MONOCYTES_14
147.6
MONOCYTES_15
147.2
MONOCYTES_16
146.9
MONOCYTES_17
146.4
MONOCYTES_18
146.0
MONOCYTES_19
145.6
MONOCYTES_20
145.5
MONOCYTES_21
145.2
MONOCYTES_22
145.1
MONOCYTES_23
144.5
MONOCYTES_24
143.3
MONOCYTES_25
143.1
MONOCYTES_26
143.0
MONOCYTES_27
142.7
MONOCYTES_28
141.9
MONOCYTES_29
141.2
MONOCYTES_30
141.1
MONOCYTES_31
141.0
MONOCYTES_32
140.6
MONOCYTES_33
140.5
MONOCYTES_34
138.2
MONOCYTES_35
137.9
MONOCYTES_36
137.6
MONOCYTES_37
137.4
MONOCYTES_38
137.2
MONOCYTES_39
136.6
MONOCYTES_40
136.1
MONOCYTES_41
136.0
MONOCYTES_42
136.0
MONOCYTES_43
135.6
MONOCYTES_44
135.2
MONOCYTES_45
135.1
MONOCYTES_46
135.0
MONOCYTES_47
134.8
MONOCYTES_48
133.5
MONOCYTES_49
133.3
MONOCYTES_50
132.8
MONOCYTES_51
132.4
MONOCYTES_52
131.9
MONOCYTES_53
131.9
MONOCYTES_54
131.3
MONOCYTES_55
131.1
MONOCYTES_56
130.8
MONOCYTES_57
130.7
MONOCYTES_58
130.6
MONOCYTES_59
130.5
MONOCYTES_60
129.2
MONOCYTES_61
128.8
MONOCYTES_62
127.4
MONOCYTES_63
127.4
MONOCYTES_64
126.9
MONOCYTES_65
126.9
MONOCYTES_66
126.9
MONOCYTES_67
126.7
MONOCYTES_68
126.7
MONOCYTES_69
126.3
MONOCYTES_70
126.3
MONOCYTES_71
125.3
MONOCYTES_72
125.0
MONOCYTES_73
124.5
MONOCYTES_74
124.4
MONOCYTES_75
124.2
MONOCYTES_76
123.6
MONOCYTES_77
122.8
MONOCYTES_78
122.3
MONOCYTES_79
120.8
MONOCYTES_80
120.0
MONOCYTES_81
118.9
MONOCYTES_82
118.9
MONOCYTES_83
118.4
MONOCYTES_84
117.2
MONOCYTES_85
116.8
MONOCYTES_86
114.9
MONOCYTES_87
109.9
MONOCYTES_88
109.5
MONOCYTES_89
108.5
MONOCYTES_90
108.1
MONOCYTES_91
101.8
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Non-classical monocyte TPM: 175.2
Samples: 90
Max TPM: 211.7
Min TPM: 141.1
M2_1
211.7
M2_2
210.2
M2_3
199.3
M2_4
196.2
M2_5
195.5
M2_6
194.0
M2_7
191.7
M2_8
191.7
M2_9
190.8
M2_10
190.2
M2_11
189.5
M2_12
189.4
M2_13
188.2
M2_14
188.0
M2_15
186.9
M2_16
186.9
M2_17
186.8
M2_18
185.8
M2_19
185.8
M2_20
185.0
M2_21
184.9
M2_22
184.8
M2_23
184.6
M2_24
184.1
M2_25
181.9
M2_26
181.6
M2_27
181.5
M2_28
181.1
M2_29
180.7
M2_30
180.5
M2_31
180.4
M2_32
179.1
M2_33
179.0
M2_34
178.2
M2_35
178.2
M2_36
178.1
M2_37
177.4
M2_38
177.4
M2_39
177.1
M2_40
177.0
M2_41
176.9
M2_42
176.8
M2_43
176.4
M2_44
175.6
M2_45
174.8
M2_46
174.5
M2_47
174.3
M2_48
173.6
M2_49
173.2
M2_50
173.1
M2_51
173.1
M2_52
172.8
M2_53
172.6
M2_54
172.3
M2_55
171.1
M2_56
170.7
M2_57
170.7
M2_58
170.3
M2_59
170.2
M2_60
168.9
M2_61
168.3
M2_62
168.2
M2_63
167.9
M2_64
167.6
M2_65
167.5
M2_66
166.7
M2_67
166.5
M2_68
166.3
M2_69
166.0
M2_70
165.6
M2_71
165.2
M2_72
165.0
M2_73
164.9
M2_74
164.4
M2_75
163.8
M2_76
162.7
M2_77
161.4
M2_78
161.4
M2_79
161.2
M2_80
160.8
M2_81
160.5
M2_82
159.9
M2_83
158.0
M2_84
157.5
M2_85
157.4
M2_86
156.5
M2_87
156.3
M2_88
154.4
M2_89
151.5
M2_90
141.1
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