A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.5
nTPM
Monaco:
49.9
nTPM
Schmiedel:
32.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.5
HPA sample
nTPM
Memory B-cell nTPM: 5.6
Samples: 6
Max nTPM: 7.8
Min nTPM: 3.3
P10809_1017
7.2
P10809_1025
6.3
P10809_1044
4.7
P10809_1063
7.8
P10809_1092
3.3
P10809_1105
4.0
Naive B-cell nTPM: 3.7
Samples: 6
Max nTPM: 5.8
Min nTPM: 1.9
P10809_1011
3.8
P10809_1029
1.9
P10809_1048
3.5
P10809_1067
5.8
P10809_1091
4.0
P10809_1104
3.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 45.9
Samples: 4
Max nTPM: 58.1
Min nTPM: 31.4
RHH5310_R3677
31.4
RHH5218_R3590
45.5
RHH5247_R3619
48.7
RHH5276_R3648
58.1
Naive B-cell nTPM: 45.1
Samples: 4
Max nTPM: 58.2
Min nTPM: 35.4
RHH5308_R3675
37.3
RHH5216_R3588
49.6
RHH5245_R3617
58.2
RHH5274_R3646
35.4
Non-switched memory B-cell nTPM: 47.5
Samples: 4
Max nTPM: 51.8
Min nTPM: 39.8
RHH5309_R3676
39.8
RHH5217_R3589
51.8
RHH5246_R3618
51.5
RHH5275_R3647
46.7
Plasmablast nTPM: 49.7
Samples: 4
Max nTPM: 64.8
Min nTPM: 25.5
RHH5312_R3679
64.8
RHH5220_R3592
25.5
RHH5249_R3621
45.1
RHH5278_R3650
63.4
Switched memory B-cell nTPM: 49.9
Samples: 4
Max nTPM: 74.3
Min nTPM: 32.6
RHH5311_R3678
41.7
RHH5219_R3591
74.3
RHH5248_R3620
50.8
RHH5277_R3649
32.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.9
Schmiedel sample id
TPM
Naive B-cell TPM: 32.9
Samples: 91
Max TPM: 42.1
Min TPM: 26.4
B_CELL_NAIVE_1
42.1
B_CELL_NAIVE_2
40.1
B_CELL_NAIVE_3
39.5
B_CELL_NAIVE_4
38.9
B_CELL_NAIVE_5
38.9
B_CELL_NAIVE_6
38.2
B_CELL_NAIVE_7
38.0
B_CELL_NAIVE_8
37.8
B_CELL_NAIVE_9
37.8
B_CELL_NAIVE_10
37.6
B_CELL_NAIVE_11
37.4
B_CELL_NAIVE_12
37.2
B_CELL_NAIVE_13
37.2
B_CELL_NAIVE_14
37.2
B_CELL_NAIVE_15
36.9
B_CELL_NAIVE_16
36.2
B_CELL_NAIVE_17
36.1
B_CELL_NAIVE_18
36.0
B_CELL_NAIVE_19
35.7
B_CELL_NAIVE_20
35.2
B_CELL_NAIVE_21
35.2
B_CELL_NAIVE_22
35.1
B_CELL_NAIVE_23
35.0
B_CELL_NAIVE_24
34.8
B_CELL_NAIVE_25
34.6
B_CELL_NAIVE_26
34.5
B_CELL_NAIVE_27
34.4
B_CELL_NAIVE_28
34.3
B_CELL_NAIVE_29
34.2
B_CELL_NAIVE_30
34.1
B_CELL_NAIVE_31
34.0
B_CELL_NAIVE_32
34.0
B_CELL_NAIVE_33
34.0
B_CELL_NAIVE_34
33.9
B_CELL_NAIVE_35
33.6
B_CELL_NAIVE_36
33.4
B_CELL_NAIVE_37
33.0
B_CELL_NAIVE_38
33.0
B_CELL_NAIVE_39
33.0
B_CELL_NAIVE_40
32.8
B_CELL_NAIVE_41
32.7
B_CELL_NAIVE_42
32.7
B_CELL_NAIVE_43
32.5
B_CELL_NAIVE_44
32.5
B_CELL_NAIVE_45
32.3
B_CELL_NAIVE_46
32.3
B_CELL_NAIVE_47
32.1
B_CELL_NAIVE_48
32.1
B_CELL_NAIVE_49
32.0
B_CELL_NAIVE_50
31.8
B_CELL_NAIVE_51
31.8
B_CELL_NAIVE_52
31.7
B_CELL_NAIVE_53
31.7
B_CELL_NAIVE_54
31.6
B_CELL_NAIVE_55
31.6
B_CELL_NAIVE_56
31.5
B_CELL_NAIVE_57
31.5
B_CELL_NAIVE_58
31.4
B_CELL_NAIVE_59
31.1
B_CELL_NAIVE_60
31.0
B_CELL_NAIVE_61
31.0
B_CELL_NAIVE_62
31.0
B_CELL_NAIVE_63
30.9
B_CELL_NAIVE_64
30.8
B_CELL_NAIVE_65
30.7
B_CELL_NAIVE_66
30.7
B_CELL_NAIVE_67
30.7
B_CELL_NAIVE_68
30.6
B_CELL_NAIVE_69
30.6
B_CELL_NAIVE_70
30.4
B_CELL_NAIVE_71
30.3
B_CELL_NAIVE_72
30.2
B_CELL_NAIVE_73
30.2
B_CELL_NAIVE_74
30.1
B_CELL_NAIVE_75
30.1
B_CELL_NAIVE_76
30.1
B_CELL_NAIVE_77
30.0
B_CELL_NAIVE_78
29.9
B_CELL_NAIVE_79
29.8
B_CELL_NAIVE_80
29.5
B_CELL_NAIVE_81
29.4
B_CELL_NAIVE_82
29.2
B_CELL_NAIVE_83
29.1
B_CELL_NAIVE_84
29.1
B_CELL_NAIVE_85
29.0
B_CELL_NAIVE_86
28.8
B_CELL_NAIVE_87
28.7
B_CELL_NAIVE_88
28.5
B_CELL_NAIVE_89
27.5
B_CELL_NAIVE_90
27.2
B_CELL_NAIVE_91
26.4
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