A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.1
nTPM
Monaco:
52.4
nTPM
Schmiedel:
34.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.1
HPA sample
nTPM
NK-cell nTPM: 9.1
Samples: 6
Max nTPM: 17.8
Min nTPM: 0.5
P10809_1013
11.6
P10809_1033
9.3
P10809_1052
10.9
P10809_1071
17.8
P10809_1093
0.5
P10809_1103
4.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.4
Monaco sample
nTPM
NK-cell nTPM: 52.4
Samples: 4
Max nTPM: 63.7
Min nTPM: 44.1
RHH5316_R3683
49.0
RHH5224_R3596
52.6
RHH5253_R3625
63.7
RHH5282_R3654
44.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.2
Schmiedel sample id
TPM
NK-cell TPM: 34.2
Samples: 90
Max TPM: 48.3
Min TPM: 25.1
NK_1
48.3
NK_2
45.1
NK_3
42.6
NK_4
41.4
NK_5
41.3
NK_6
41.0
NK_7
40.6
NK_8
40.1
NK_9
39.6
NK_10
38.7
NK_11
38.7
NK_12
37.8
NK_13
37.4
NK_14
37.3
NK_15
37.2
NK_16
37.1
NK_17
37.0
NK_18
36.9
NK_19
36.7
NK_20
36.5
NK_21
36.5
NK_22
36.4
NK_23
36.4
NK_24
36.3
NK_25
36.3
NK_26
35.8
NK_27
35.7
NK_28
35.7
NK_29
35.1
NK_30
35.0
NK_31
34.9
NK_32
34.8
NK_33
34.7
NK_34
34.7
NK_35
34.6
NK_36
34.6
NK_37
34.6
NK_38
34.4
NK_39
34.4
NK_40
34.3
NK_41
34.2
NK_42
34.2
NK_43
34.2
NK_44
34.1
NK_45
34.1
NK_46
34.1
NK_47
33.7
NK_48
33.6
NK_49
33.5
NK_50
33.4
NK_51
33.3
NK_52
33.3
NK_53
33.3
NK_54
33.0
NK_55
32.9
NK_56
32.9
NK_57
32.8
NK_58
32.8
NK_59
32.6
NK_60
32.6
NK_61
32.5
NK_62
32.4
NK_63
32.3
NK_64
32.2
NK_65
32.0
NK_66
31.9
NK_67
31.9
NK_68
31.7
NK_69
31.6
NK_70
31.4
NK_71
31.2
NK_72
31.1
NK_73
31.1
NK_74
31.0
NK_75
30.8
NK_76
30.7
NK_77
30.5
NK_78
30.3
NK_79
30.1
NK_80
29.9
NK_81
29.8
NK_82
29.8
NK_83
29.2
NK_84
28.8
NK_85
28.7
NK_86
28.6
NK_87
28.0
NK_88
27.7
NK_89
26.5
NK_90
25.1
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