HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.8 nTPM
HPA Brain:65.3 nTPM
GTEx:73.8 nTPM
FANTOM5:97.5 Scaled Tags Per Million
Pig:36.6 nTPM
Mouse:40.2 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 65.3
Sample id Sample description nTPM
Hippocampus
nTPM: 58.1
1911 Female, age 85, right hemisphere 63.7
2529 Female, age 94, left hemisphere 63.5
1855 Male, age 76, left hemisphere 59.2
1898 Male, age 80, left hemisphere 57.9
2621 Female, age 67, right hemisphere 55.6
2148 Female, age 91, left hemisphere 48.6
Dentate gyrus
nTPM: 54.4
2530 Female, age 94, left hemisphere 69.7
2010 Male, age 76, both hemispheres 64.8
2528 Male, age 74, both hemispheres 57.0
2246 Female, age 85, both hemispheres 51.7
2531 Female, age 67, both hemispheres 42.6
1927 Female, age 91, both hemispheres 40.3
Entorhinal gyrus
nTPM: 53.0
2117 Female, age 91, right hemisphere 74.2
2686 Male, age 75, right hemisphere 52.7
1787 Male, age 76, left hemisphere 51.4
2764 Male, age 80, right hemisphere 49.2
1938 Female, age 85, left hemisphere 48.6
2613 Female, age 94, left hemisphere 41.8
Hippocampus, CA1
nTPM: 50.6
2527 Male, age 74, both hemispheres 58.4
2082 Female, age 91, right hemisphere 51.9
2045 Male, age 76, both hemispheres 51.1
1873 Female, age 85, both hemispheres 50.6
2749 Male, age 80, left hemisphere 41.2
Hippocampus, CA2
nTPM: 55.8
2249 Male, age 74, both hemispheres 66.7
1963 Male, age 80, left hemisphere 59.2
2437 Female, age 94, left hemisphere 56.8
2113 Female, age 91, right hemisphere 54.0
1940 Female, age 85, left hemisphere 53.6
1892 Male, age 76, both hemispheres 44.3
Hippocampus, CA3
nTPM: 50.5
1891 Female, age 85, both hemispheres 67.1
1867 Male, age 76, both hemispheres 59.7
2436 Male, age 74, both hemispheres 54.4
2137 Male, age 80, left hemisphere 42.4
2620 Female, age 94, left hemisphere 41.4
2861 Female, age 67, both hemispheres 38.0
Parahippocampal cortex
nTPM: 50.2
2018 Male, age 76, both hemispheres 62.0
2532 Female, age 72, left hemisphere 58.0
1990 Female, age 91, right hemisphere 53.5
2692 Male, age 74, both hemispheres 52.7
1850 Male, age 80, both hemispheres 51.2
2245 Female, age 91, both hemispheres 49.0
1933 Female, age 85, both hemispheres 47.1
2250 Female, age 67, right hemisphere 45.9
2693 Female, age 94, both hemispheres 42.6
2622 Female, age 67, right hemisphere 40.2
Perirhinal gyrus
nTPM: 44.6
2848 Male, age 76, right hemisphere 46.7
2521 Female, age 94, right hemisphere 46.5
1841 Female, age 85, right hemisphere 45.6
1794 Male, age 80, right hemisphere 44.9
1847 Female, age 91, left hemisphere 39.5
Subiculum
nTPM: 65.3
2042 Male, age 76, both hemispheres 87.2
1901 Male, age 80, both hemispheres 66.4
1977 Female, age 85, both hemispheres 62.8
2438 Female, age 94, left hemisphere 61.0
2729 Female, age 91, right hemisphere 60.1
2619 Male, age 74, both hemispheres 54.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 73.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 73.8
Samples: 255

Max nTPM: 208.4
Min nTPM: 31.1
Std nTPM: 27.5
Median nTPM: 67.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 208.4
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 176.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 154.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 151.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 146.2
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 145.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 140.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 135.0
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 132.4
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 130.7
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 129.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 97.5
FF:10153-102I9 76 years, female 125.4
FF:10169-103B7 60 years, female 69.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 36.6
Pig sample Sample description nTPM
Subiculum
nTPM: 24.4
Samples: 4

Max nTPM: 28.5
Min nTPM: 21.4
Sample A Female 28.5
Sample B Female 24.3
Sample C Male 21.4
Sample D Male 23.5
Dorsal hippocampus
nTPM: 36.6
Samples: 4

Max nTPM: 52.3
Min nTPM: 20.0
Sample A Female 52.3
Sample B Female 28.8
Sample C Male 45.4
Sample D Male 20.0
Entorhinal cortex
nTPM: 22.7
Samples: 4

Max nTPM: 27.0
Min nTPM: 18.1
Sample A Female 22.0
Sample B Female 27.0
Sample C Male 23.8
Sample D Male 18.1
Ventral hippocampus
nTPM: 29.6
Samples: 4

Max nTPM: 34.2
Min nTPM: 21.0
Sample A Female 31.3
Sample B Female 21.0
Sample C Male 34.2
Sample D Male 31.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 40.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.7
Samples: 4

Max nTPM: 34.6
Min nTPM: 30.3
Sample A Male 34.6
Sample B Male 32.0
Sample C Female 33.7
Sample D Female 30.3
Hippocampal formation
nTPM: 40.3
Samples: 4

Max nTPM: 45.9
Min nTPM: 35.9
Sample A Male 40.2
Sample B Male 35.9
Sample C Female 45.9
Sample D Female 39.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
71378603 Antisense, RP_050517_02_A01, Mouse strain C57BL/6J (56 days, male) 0.3
70919812 Antisense, RP_050713_02_B02, Mouse strain C57BL/6J (56 days, male) 0.0

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