A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.9
nTPM
Monaco:
45.7
nTPM
Schmiedel:
36.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.9
HPA sample
nTPM
NK-cell nTPM: 42.9
Samples: 6
Max nTPM: 97.6
Min nTPM: 16.0
P10809_1013
16.0
P10809_1033
44.5
P10809_1052
30.8
P10809_1071
31.6
P10809_1093
97.6
P10809_1103
36.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.7
Monaco sample
nTPM
NK-cell nTPM: 45.7
Samples: 4
Max nTPM: 58.6
Min nTPM: 30.0
RHH5316_R3683
54.6
RHH5224_R3596
58.6
RHH5253_R3625
30.0
RHH5282_R3654
39.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.5
Schmiedel sample id
TPM
NK-cell TPM: 36.5
Samples: 90
Max TPM: 51.5
Min TPM: 21.5
NK_1
51.5
NK_2
50.4
NK_3
50.1
NK_4
47.5
NK_5
47.5
NK_6
46.9
NK_7
46.7
NK_8
46.5
NK_9
45.9
NK_10
44.4
NK_11
44.4
NK_12
43.0
NK_13
43.0
NK_14
42.7
NK_15
42.3
NK_16
42.1
NK_17
42.0
NK_18
41.9
NK_19
41.9
NK_20
41.8
NK_21
41.8
NK_22
41.6
NK_23
41.1
NK_24
40.9
NK_25
40.8
NK_26
40.6
NK_27
40.3
NK_28
40.2
NK_29
40.1
NK_30
39.9
NK_31
39.5
NK_32
39.3
NK_33
39.2
NK_34
39.0
NK_35
38.9
NK_36
38.8
NK_37
38.1
NK_38
37.8
NK_39
37.6
NK_40
37.5
NK_41
37.5
NK_42
37.4
NK_43
37.4
NK_44
36.9
NK_45
36.8
NK_46
36.3
NK_47
35.8
NK_48
35.7
NK_49
35.2
NK_50
35.1
NK_51
35.0
NK_52
34.9
NK_53
34.6
NK_54
34.5
NK_55
34.4
NK_56
33.9
NK_57
33.9
NK_58
33.9
NK_59
33.8
NK_60
33.7
NK_61
33.6
NK_62
33.5
NK_63
33.3
NK_64
32.8
NK_65
32.7
NK_66
32.5
NK_67
32.4
NK_68
32.2
NK_69
31.8
NK_70
31.8
NK_71
31.1
NK_72
31.1
NK_73
30.5
NK_74
30.3
NK_75
30.1
NK_76
29.8
NK_77
29.8
NK_78
29.2
NK_79
29.2
NK_80
29.0
NK_81
28.6
NK_82
28.0
NK_83
27.5
NK_84
27.3
NK_85
26.6
NK_86
26.2
NK_87
25.7
NK_88
24.2
NK_89
24.2
NK_90
21.5
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
