A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.1
nTPM
Monaco:
62.0
nTPM
Schmiedel:
35.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.1
HPA sample
nTPM
Classical monocyte nTPM: 36.6
Samples: 6
Max nTPM: 59.0
Min nTPM: 21.8
P10809_1003
25.1
P10809_1020
39.3
P10809_1039
59.0
P10809_1058
21.8
P10809_1080
34.8
P10809_1107
39.5
Intermediate monocyte nTPM: 42.1
Samples: 6
Max nTPM: 52.5
Min nTPM: 29.8
P10809_1004
36.5
P10809_1023
50.1
P10809_1042
52.5
P10809_1061
41.6
P10809_1081
29.8
P10809_1108
42.2
Non-classical monocyte nTPM: 40.0
Samples: 5
Max nTPM: 49.4
Min nTPM: 34.2
P10809_1005
35.4
P10809_1053
49.4
P10809_1072
34.5
P10809_1082
34.2
P10809_1109
46.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.0
Monaco sample
nTPM
Classical monocyte nTPM: 55.8
Samples: 4
Max nTPM: 60.4
Min nTPM: 53.8
RHH5313_R3680
53.8
RHH5221_R3593
54.2
RHH5250_R3622
60.4
RHH5279_R3651
54.9
Intermediate monocyte nTPM: 62.0
Samples: 4
Max nTPM: 77.3
Min nTPM: 43.2
RHH5314_R3681
76.0
RHH5222_R3594
43.2
RHH5251_R3623
51.6
RHH5280_R3652
77.3
Non-classical monocyte nTPM: 57.7
Samples: 4
Max nTPM: 66.6
Min nTPM: 46.8
RHH5315_R3682
63.2
RHH5223_R3595
46.8
RHH5252_R3624
54.1
RHH5281_R3653
66.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.1
Schmiedel sample id
TPM
Classical monocyte TPM: 24.6
Samples: 91
Max TPM: 34.6
Min TPM: 14.0
MONOCYTES_1
34.6
MONOCYTES_2
33.9
MONOCYTES_3
32.3
MONOCYTES_4
30.7
MONOCYTES_5
30.4
MONOCYTES_6
30.3
MONOCYTES_7
30.2
MONOCYTES_8
30.1
MONOCYTES_9
29.9
MONOCYTES_10
29.8
MONOCYTES_11
29.8
MONOCYTES_12
29.3
MONOCYTES_13
28.9
MONOCYTES_14
28.7
MONOCYTES_15
28.0
MONOCYTES_16
27.9
MONOCYTES_17
27.9
MONOCYTES_18
27.7
MONOCYTES_19
27.6
MONOCYTES_20
27.6
MONOCYTES_21
27.5
MONOCYTES_22
27.5
MONOCYTES_23
27.4
MONOCYTES_24
27.1
MONOCYTES_25
27.1
MONOCYTES_26
27.1
MONOCYTES_27
26.9
MONOCYTES_28
26.9
MONOCYTES_29
26.9
MONOCYTES_30
26.9
MONOCYTES_31
26.5
MONOCYTES_32
26.4
MONOCYTES_33
26.2
MONOCYTES_34
26.1
MONOCYTES_35
25.8
MONOCYTES_36
25.7
MONOCYTES_37
25.6
MONOCYTES_38
25.4
MONOCYTES_39
25.3
MONOCYTES_40
25.2
MONOCYTES_41
25.2
MONOCYTES_42
25.1
MONOCYTES_43
25.1
MONOCYTES_44
25.0
MONOCYTES_45
24.9
MONOCYTES_46
24.8
MONOCYTES_47
24.8
MONOCYTES_48
24.7
MONOCYTES_49
24.7
MONOCYTES_50
24.5
MONOCYTES_51
24.2
MONOCYTES_52
23.9
MONOCYTES_53
23.8
MONOCYTES_54
23.8
MONOCYTES_55
23.4
MONOCYTES_56
23.2
MONOCYTES_57
23.1
MONOCYTES_58
22.8
MONOCYTES_59
22.5
MONOCYTES_60
22.5
MONOCYTES_61
22.4
MONOCYTES_62
22.1
MONOCYTES_63
21.9
MONOCYTES_64
21.9
MONOCYTES_65
21.8
MONOCYTES_66
21.8
MONOCYTES_67
21.6
MONOCYTES_68
21.5
MONOCYTES_69
21.5
MONOCYTES_70
21.4
MONOCYTES_71
21.4
MONOCYTES_72
21.4
MONOCYTES_73
21.3
MONOCYTES_74
21.1
MONOCYTES_75
20.9
MONOCYTES_76
20.8
MONOCYTES_77
20.6
MONOCYTES_78
20.5
MONOCYTES_79
20.5
MONOCYTES_80
20.3
MONOCYTES_81
20.3
MONOCYTES_82
20.2
MONOCYTES_83
19.8
MONOCYTES_84
19.7
MONOCYTES_85
19.6
MONOCYTES_86
19.3
MONOCYTES_87
19.2
MONOCYTES_88
17.6
MONOCYTES_89
17.3
MONOCYTES_90
16.7
MONOCYTES_91
14.0
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Non-classical monocyte TPM: 35.1
Samples: 90
Max TPM: 45.5
Min TPM: 19.3
M2_1
45.5
M2_2
45.3
M2_3
44.0
M2_4
42.8
M2_5
42.8
M2_6
42.8
M2_7
42.6
M2_8
42.6
M2_9
40.9
M2_10
40.7
M2_11
40.5
M2_12
40.4
M2_13
40.4
M2_14
40.2
M2_15
39.9
M2_16
39.8
M2_17
39.8
M2_18
39.8
M2_19
39.3
M2_20
39.2
M2_21
39.2
M2_22
39.1
M2_23
38.8
M2_24
38.7
M2_25
38.7
M2_26
38.6
M2_27
38.2
M2_28
38.1
M2_29
38.1
M2_30
38.1
M2_31
38.0
M2_32
37.8
M2_33
37.5
M2_34
37.4
M2_35
37.4
M2_36
37.3
M2_37
37.2
M2_38
37.2
M2_39
37.0
M2_40
36.6
M2_41
36.2
M2_42
36.2
M2_43
36.1
M2_44
35.9
M2_45
35.8
M2_46
35.7
M2_47
35.5
M2_48
35.4
M2_49
34.9
M2_50
34.9
M2_51
34.6
M2_52
34.5
M2_53
34.4
M2_54
34.2
M2_55
34.0
M2_56
33.8
M2_57
33.3
M2_58
33.3
M2_59
33.1
M2_60
32.8
M2_61
32.7
M2_62
32.3
M2_63
31.9
M2_64
31.9
M2_65
31.9
M2_66
31.6
M2_67
31.3
M2_68
31.3
M2_69
31.2
M2_70
31.2
M2_71
31.1
M2_72
31.0
M2_73
30.8
M2_74
30.5
M2_75
30.5
M2_76
30.2
M2_77
30.2
M2_78
30.1
M2_79
28.9
M2_80
27.9
M2_81
27.8
M2_82
27.7
M2_83
27.3
M2_84
27.1
M2_85
27.0
M2_86
26.9
M2_87
26.0
M2_88
25.0
M2_89
24.2
M2_90
19.3
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