A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
45.4
nTPM
Monaco:
199.9
nTPM
Schmiedel:
25.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.4
HPA sample
nTPM
Memory B-cell nTPM: 45.4
Samples: 6
Max nTPM: 53.1
Min nTPM: 37.5
P10809_1017
40.6
P10809_1025
50.9
P10809_1044
53.1
P10809_1063
37.5
P10809_1092
49.5
P10809_1105
40.6
Naive B-cell nTPM: 28.2
Samples: 6
Max nTPM: 39.3
Min nTPM: 20.1
P10809_1011
20.1
P10809_1029
30.2
P10809_1048
39.3
P10809_1067
21.7
P10809_1091
29.8
P10809_1104
28.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
199.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 96.2
Samples: 4
Max nTPM: 107.4
Min nTPM: 79.1
RHH5310_R3677
107.4
RHH5218_R3590
101.7
RHH5247_R3619
96.4
RHH5276_R3648
79.1
Naive B-cell nTPM: 96.3
Samples: 4
Max nTPM: 150.4
Min nTPM: 64.5
RHH5308_R3675
96.5
RHH5216_R3588
150.4
RHH5245_R3617
64.5
RHH5274_R3646
73.7
Non-switched memory B-cell nTPM: 106.9
Samples: 4
Max nTPM: 131.9
Min nTPM: 78.0
RHH5309_R3676
120.4
RHH5217_R3589
131.9
RHH5246_R3618
78.0
RHH5275_R3647
97.1
Plasmablast nTPM: 199.9
Samples: 4
Max nTPM: 224.0
Min nTPM: 172.1
RHH5312_R3679
224.0
RHH5220_R3592
206.2
RHH5249_R3621
197.1
RHH5278_R3650
172.1
Switched memory B-cell nTPM: 97.4
Samples: 4
Max nTPM: 135.0
Min nTPM: 70.4
RHH5311_R3678
70.4
RHH5219_R3591
135.0
RHH5248_R3620
111.2
RHH5277_R3649
72.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.7
Schmiedel sample id
TPM
Naive B-cell TPM: 25.7
Samples: 91
Max TPM: 50.6
Min TPM: 16.1
B_CELL_NAIVE_1
50.6
B_CELL_NAIVE_2
43.5
B_CELL_NAIVE_3
41.3
B_CELL_NAIVE_4
38.9
B_CELL_NAIVE_5
36.4
B_CELL_NAIVE_6
36.2
B_CELL_NAIVE_7
34.2
B_CELL_NAIVE_8
33.6
B_CELL_NAIVE_9
31.9
B_CELL_NAIVE_10
31.5
B_CELL_NAIVE_11
31.3
B_CELL_NAIVE_12
31.0
B_CELL_NAIVE_13
30.9
B_CELL_NAIVE_14
29.7
B_CELL_NAIVE_15
29.5
B_CELL_NAIVE_16
29.5
B_CELL_NAIVE_17
29.3
B_CELL_NAIVE_18
28.9
B_CELL_NAIVE_19
28.5
B_CELL_NAIVE_20
28.2
B_CELL_NAIVE_21
28.2
B_CELL_NAIVE_22
28.2
B_CELL_NAIVE_23
28.1
B_CELL_NAIVE_24
28.1
B_CELL_NAIVE_25
28.0
B_CELL_NAIVE_26
28.0
B_CELL_NAIVE_27
28.0
B_CELL_NAIVE_28
27.8
B_CELL_NAIVE_29
27.5
B_CELL_NAIVE_30
27.5
B_CELL_NAIVE_31
26.8
B_CELL_NAIVE_32
26.7
B_CELL_NAIVE_33
26.5
B_CELL_NAIVE_34
26.4
B_CELL_NAIVE_35
25.8
B_CELL_NAIVE_36
25.7
B_CELL_NAIVE_37
25.6
B_CELL_NAIVE_38
25.5
B_CELL_NAIVE_39
25.5
B_CELL_NAIVE_40
25.3
B_CELL_NAIVE_41
25.3
B_CELL_NAIVE_42
25.2
B_CELL_NAIVE_43
25.2
B_CELL_NAIVE_44
24.8
B_CELL_NAIVE_45
24.7
B_CELL_NAIVE_46
24.7
B_CELL_NAIVE_47
24.7
B_CELL_NAIVE_48
24.6
B_CELL_NAIVE_49
24.6
B_CELL_NAIVE_50
24.3
B_CELL_NAIVE_51
24.3
B_CELL_NAIVE_52
24.3
B_CELL_NAIVE_53
24.2
B_CELL_NAIVE_54
24.0
B_CELL_NAIVE_55
23.7
B_CELL_NAIVE_56
23.4
B_CELL_NAIVE_57
23.3
B_CELL_NAIVE_58
23.1
B_CELL_NAIVE_59
23.0
B_CELL_NAIVE_60
23.0
B_CELL_NAIVE_61
22.9
B_CELL_NAIVE_62
22.9
B_CELL_NAIVE_63
22.5
B_CELL_NAIVE_64
22.5
B_CELL_NAIVE_65
22.3
B_CELL_NAIVE_66
22.3
B_CELL_NAIVE_67
22.3
B_CELL_NAIVE_68
22.2
B_CELL_NAIVE_69
22.1
B_CELL_NAIVE_70
22.0
B_CELL_NAIVE_71
22.0
B_CELL_NAIVE_72
21.9
B_CELL_NAIVE_73
21.6
B_CELL_NAIVE_74
21.5
B_CELL_NAIVE_75
21.1
B_CELL_NAIVE_76
21.0
B_CELL_NAIVE_77
20.9
B_CELL_NAIVE_78
20.9
B_CELL_NAIVE_79
20.8
B_CELL_NAIVE_80
20.4
B_CELL_NAIVE_81
20.3
B_CELL_NAIVE_82
19.9
B_CELL_NAIVE_83
19.8
B_CELL_NAIVE_84
19.4
B_CELL_NAIVE_85
19.1
B_CELL_NAIVE_86
18.9
B_CELL_NAIVE_87
18.7
B_CELL_NAIVE_88
18.4
B_CELL_NAIVE_89
17.2
B_CELL_NAIVE_90
17.0
B_CELL_NAIVE_91
16.1
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