MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.9 nTPM
HPA Brain:18.7 nTPM
GTEx:4.9 nTPM
FANTOM5:20.3 Scaled Tags Per Million
Pig:12.2 nTPM
Mouse:8.4 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 18.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.5
2586 Male, age 75, left hemisphere 19.5
1827 Male, age 72, unknown 18.2
2828 Female, age 72, unknown 17.2
2666 Male, age 74, left hemisphere 17.0
2411 Female, age 72, unknown 16.7
2019 Male, age 18, unknown 16.5
1833 Male, age 53, unknown 15.7
1830 Male, age 51, unknown 15.5
1870 Female, age 42, unknown 14.5
2219 Male, age 76, both hemispheres 14.5
Dorsal raphe nucleus
nTPM: 15.6
2298 Female, age 72, unknown 17.6
2016 Female, age 72, unknown 16.1
2047 Male, age 72, unknown 15.7
1828 Male, age 53, unknown 14.6
2750 Male, age 76, both hemispheres 14.0
Inferior colliculus
nTPM: 16.5
2849 Male, age 72, unknown 17.5
1890 Male, age 53, unknown 16.3
1848 Female, age 42, unknown 16.2
2097 Female, age 72, unknown 15.9
Median raphe nucleus
nTPM: 15.5
2220 Male, age 76, midline 15.5
Periaquaductal grey, anterior
nTPM: 18.4
1795 Male, age 51, unknown 20.4
1947 Male, age 18, unknown 17.6
2502 Female, age 75, unknown 17.1
Periaquaductal grey, dorsal
nTPM: 16.9
1840 Male, age 53, unknown 18.4
2464 Female, age 72, unknown 16.8
2850 Male, age 76, both hemispheres 16.6
1831 Male, age 72, unknown 15.8
Periaquaductal grey, lateral
nTPM: 18.7
2140 Male, age 76, both hemispheres 19.3
2272 Male, age 74, both hemispheres 19.1
2053 Male, age 18, unknown 17.9
Pretectal area
nTPM: 17.8
2407 Male, age 75, both hemispheres 19.9
2316 Male, age 76, right hemisphere 19.2
2273 Male, age 74, both hemispheres 18.7
2007 Male, age 72, unknown 18.2
2667 Female, age 75, unknown 18.2
1816 Male, age 51, unknown 17.7
2825 Male, age 18, unknown 17.3
1815 Male, age 53, unknown 16.9
1944 Female, age 72, unknown 16.8
2224 Female, age 72, unknown 16.4
1817 Female, age 42, unknown 16.2
Red nucleus
nTPM: 15.7
2588 Male, age 74, left hemisphere 17.7
2785 Male, age 18, unknown 16.7
2584 Male, age 75, left hemisphere 16.5
2769 Male, age 72, unknown 16.3
2227 Male, age 72, unknown 16.1
2725 Female, age 75, unknown 16.0
2503 Female, age 72, unknown 15.3
2823 Male, age 76, right hemisphere 15.3
1865 Male, age 51, unknown 15.0
1904 Male, age 53, unknown 14.9
1821 Female, age 72, unknown 14.3
1954 Female, age 42, unknown 14.0
Substantia nigra
nTPM: 15.6
2583 Male, age 75, right hemisphere 19.8
2665 Male, age 74, both hemispheres 18.0
2590 Female, age 75, unknown 17.3
1916 Female, age 42, unknown 16.0
1851 Male, age 51, unknown 15.9
1941 Male, age 53, unknown 15.7
1889 Female, age 72, unknown 14.8
2699 Male, age 18, unknown 14.2
2241 Male, age 72, unknown 12.7
2409 Female, age 72, unknown 11.3
Superior colliculus
nTPM: 16.8
2664 Male, age 75, both hemispheres 20.1
2261 Male, age 18, unknown 19.0
1796 Male, age 53, unknown 18.8
2087 Female, age 72, unknown 17.2
1995 Male, age 72, unknown 16.6
1913 Female, age 42, unknown 15.9
1839 Male, age 51, unknown 15.8
2587 Male, age 74, left hemisphere 15.3
2668 Female, age 75, unknown 15.2
1895 Male, age 76, right hemisphere 14.5
Ventral tegmental area
nTPM: 15.6
1942 Male, age 51, unknown 16.0
2410 Female, age 72, unknown 15.8
2223 Female, age 72, unknown 15.6
2021 Male, age 53, unknown 15.5
1915 Female, age 42, unknown 15.4
2218 Male, age 76, both hemispheres 15.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.9
Samples: 183

Max nTPM: 12.6
Min nTPM: 1.9
Std nTPM: 1.5
Median nTPM: 4.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 12.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 10.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 9.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 9.0
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 8.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 8.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 8.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 7.8
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 7.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 7.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 7.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.3
FF:10158-103A5 76 years, female 20.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.3
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.1
Sample A Female 11.4
Sample B Female 10.7
Sample C Male 13.0
Sample D Male 10.1
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 15.4
Min nTPM: 8.2
Sample A Female 8.3
Sample B Female 8.2
Sample C Male 15.4
Sample D Male 14.0
Periaqueductal gray
nTPM: 9.2
Samples: 3

Max nTPM: 10.4
Min nTPM: 8.5
Sample B Female 8.7
Sample C Male 10.4
Sample D Male 8.5
Superior colliculi
nTPM: 12.3
Samples: 4

Max nTPM: 13.6
Min nTPM: 10.6
Sample A Female 12.0
Sample B Female 10.6
Sample C Male 13.6
Sample D Male 12.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 8.6
Min nTPM: 8.1
Sample A Male 8.6
Sample B Male 8.1
Sample C Female 8.6
Sample D Female 8.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
71656725 Antisense, RP_050927_04_B11, Mouse strain C57BL/6J (56 days, male) 2.3

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