A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
31.4
nTPM
Schmiedel:
78.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
NK-cell nTPM: 1.1
Samples: 6
Max nTPM: 3.7
Min nTPM: 0.0
P10809_1013
1.4
P10809_1033
1.1
P10809_1052
0.3
P10809_1071
3.7
P10809_1093
0.0
P10809_1103
0.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.4
Monaco sample
nTPM
NK-cell nTPM: 31.4
Samples: 4
Max nTPM: 47.7
Min nTPM: 8.4
RHH5316_R3683
32.2
RHH5224_R3596
8.4
RHH5253_R3625
47.7
RHH5282_R3654
37.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.3
Schmiedel sample id
TPM
NK-cell TPM: 78.3
Samples: 90
Max TPM: 115.8
Min TPM: 36.8
NK_1
115.8
NK_2
115.0
NK_3
111.1
NK_4
109.8
NK_5
106.6
NK_6
105.4
NK_7
104.4
NK_8
103.5
NK_9
103.2
NK_10
102.7
NK_11
102.5
NK_12
102.5
NK_13
102.3
NK_14
100.3
NK_15
97.3
NK_16
96.8
NK_17
96.8
NK_18
95.9
NK_19
94.9
NK_20
94.5
NK_21
93.4
NK_22
93.3
NK_23
92.8
NK_24
92.4
NK_25
89.9
NK_26
88.6
NK_27
88.4
NK_28
88.2
NK_29
87.8
NK_30
87.5
NK_31
86.6
NK_32
85.8
NK_33
85.7
NK_34
85.0
NK_35
84.7
NK_36
83.8
NK_37
82.5
NK_38
81.9
NK_39
80.9
NK_40
80.5
NK_41
79.6
NK_42
79.1
NK_43
78.8
NK_44
78.7
NK_45
78.5
NK_46
77.6
NK_47
77.0
NK_48
76.7
NK_49
76.4
NK_50
75.9
NK_51
75.4
NK_52
75.3
NK_53
74.3
NK_54
74.0
NK_55
73.1
NK_56
71.8
NK_57
71.4
NK_58
70.6
NK_59
70.5
NK_60
69.4
NK_61
68.6
NK_62
68.0
NK_63
67.2
NK_64
66.9
NK_65
66.7
NK_66
66.0
NK_67
64.6
NK_68
63.8
NK_69
63.7
NK_70
63.3
NK_71
62.5
NK_72
61.9
NK_73
61.9
NK_74
61.3
NK_75
60.7
NK_76
59.8
NK_77
58.3
NK_78
57.7
NK_79
57.0
NK_80
56.9
NK_81
55.1
NK_82
53.2
NK_83
52.0
NK_84
51.8
NK_85
50.9
NK_86
49.3
NK_87
48.2
NK_88
45.4
NK_89
38.6
NK_90
36.8
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