A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.1
nTPM
Monaco:
37.1
nTPM
Schmiedel:
65.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.1
HPA sample
nTPM
Classical monocyte nTPM: 3.1
Samples: 6
Max nTPM: 3.9
Min nTPM: 1.9
P10809_1003
3.3
P10809_1020
3.4
P10809_1039
1.9
P10809_1058
3.9
P10809_1080
2.8
P10809_1107
3.5
Intermediate monocyte nTPM: 1.3
Samples: 6
Max nTPM: 2.5
Min nTPM: 0.6
P10809_1004
1.2
P10809_1023
0.6
P10809_1042
0.8
P10809_1061
2.5
P10809_1081
1.5
P10809_1108
0.9
Non-classical monocyte nTPM: 1.1
Samples: 5
Max nTPM: 2.0
Min nTPM: 0.6
P10809_1005
2.0
P10809_1053
1.0
P10809_1072
0.6
P10809_1082
1.0
P10809_1109
0.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.1
Monaco sample
nTPM
Classical monocyte nTPM: 37.1
Samples: 4
Max nTPM: 45.0
Min nTPM: 29.8
RHH5313_R3680
38.2
RHH5221_R3593
29.8
RHH5250_R3622
45.0
RHH5279_R3651
35.5
Intermediate monocyte nTPM: 25.0
Samples: 4
Max nTPM: 27.6
Min nTPM: 23.2
RHH5314_R3681
27.6
RHH5222_R3594
25.9
RHH5251_R3623
23.3
RHH5280_R3652
23.2
Non-classical monocyte nTPM: 23.0
Samples: 4
Max nTPM: 29.2
Min nTPM: 17.1
RHH5315_R3682
26.2
RHH5223_R3595
19.3
RHH5252_R3624
29.2
RHH5281_R3653
17.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.2
Schmiedel sample id
TPM
Classical monocyte TPM: 65.2
Samples: 91
Max TPM: 104.2
Min TPM: 36.2
MONOCYTES_1
104.2
MONOCYTES_2
98.1
MONOCYTES_3
95.3
MONOCYTES_4
94.6
MONOCYTES_5
93.9
MONOCYTES_6
92.6
MONOCYTES_7
89.1
MONOCYTES_8
87.3
MONOCYTES_9
86.9
MONOCYTES_10
86.7
MONOCYTES_11
86.3
MONOCYTES_12
85.4
MONOCYTES_13
84.4
MONOCYTES_14
83.2
MONOCYTES_15
83.1
MONOCYTES_16
80.8
MONOCYTES_17
79.6
MONOCYTES_18
78.2
MONOCYTES_19
77.1
MONOCYTES_20
76.0
MONOCYTES_21
75.8
MONOCYTES_22
75.6
MONOCYTES_23
75.2
MONOCYTES_24
74.9
MONOCYTES_25
74.5
MONOCYTES_26
74.1
MONOCYTES_27
71.7
MONOCYTES_28
71.7
MONOCYTES_29
71.6
MONOCYTES_30
71.2
MONOCYTES_31
70.7
MONOCYTES_32
70.6
MONOCYTES_33
70.6
MONOCYTES_34
69.5
MONOCYTES_35
68.8
MONOCYTES_36
68.6
MONOCYTES_37
68.4
MONOCYTES_38
67.7
MONOCYTES_39
66.9
MONOCYTES_40
66.8
MONOCYTES_41
66.1
MONOCYTES_42
65.6
MONOCYTES_43
65.6
MONOCYTES_44
64.0
MONOCYTES_45
63.7
MONOCYTES_46
63.5
MONOCYTES_47
63.2
MONOCYTES_48
62.8
MONOCYTES_49
62.8
MONOCYTES_50
62.3
MONOCYTES_51
61.9
MONOCYTES_52
61.1
MONOCYTES_53
61.0
MONOCYTES_54
60.5
MONOCYTES_55
60.5
MONOCYTES_56
59.9
MONOCYTES_57
59.8
MONOCYTES_58
59.7
MONOCYTES_59
58.3
MONOCYTES_60
58.3
MONOCYTES_61
58.2
MONOCYTES_62
58.1
MONOCYTES_63
58.0
MONOCYTES_64
56.4
MONOCYTES_65
56.3
MONOCYTES_66
55.9
MONOCYTES_67
55.4
MONOCYTES_68
55.3
MONOCYTES_69
54.7
MONOCYTES_70
54.6
MONOCYTES_71
53.6
MONOCYTES_72
52.1
MONOCYTES_73
51.4
MONOCYTES_74
50.8
MONOCYTES_75
50.6
MONOCYTES_76
50.6
MONOCYTES_77
47.9
MONOCYTES_78
47.8
MONOCYTES_79
46.9
MONOCYTES_80
46.8
MONOCYTES_81
46.8
MONOCYTES_82
46.2
MONOCYTES_83
45.4
MONOCYTES_84
45.0
MONOCYTES_85
43.6
MONOCYTES_86
41.6
MONOCYTES_87
40.5
MONOCYTES_88
40.5
MONOCYTES_89
39.2
MONOCYTES_90
38.2
MONOCYTES_91
36.2
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Non-classical monocyte TPM: 40.2
Samples: 90
Max TPM: 62.5
Min TPM: 21.3
M2_1
62.5
M2_2
62.0
M2_3
61.1
M2_4
57.7
M2_5
57.4
M2_6
56.4
M2_7
54.9
M2_8
54.6
M2_9
53.4
M2_10
53.1
M2_11
53.0
M2_12
51.6
M2_13
50.2
M2_14
50.2
M2_15
48.8
M2_16
48.5
M2_17
48.3
M2_18
48.3
M2_19
47.6
M2_20
47.6
M2_21
47.6
M2_22
46.1
M2_23
45.9
M2_24
45.7
M2_25
45.6
M2_26
45.4
M2_27
45.2
M2_28
45.1
M2_29
45.0
M2_30
44.9
M2_31
44.3
M2_32
43.8
M2_33
43.5
M2_34
43.2
M2_35
42.9
M2_36
42.7
M2_37
42.5
M2_38
42.2
M2_39
42.1
M2_40
42.0
M2_41
41.9
M2_42
41.9
M2_43
41.8
M2_44
41.6
M2_45
41.3
M2_46
40.1
M2_47
39.9
M2_48
39.3
M2_49
39.2
M2_50
39.2
M2_51
38.5
M2_52
38.4
M2_53
38.4
M2_54
38.0
M2_55
36.9
M2_56
36.9
M2_57
36.6
M2_58
36.4
M2_59
35.4
M2_60
34.9
M2_61
34.9
M2_62
34.3
M2_63
34.2
M2_64
34.2
M2_65
34.0
M2_66
33.8
M2_67
33.4
M2_68
33.2
M2_69
33.2
M2_70
32.9
M2_71
32.9
M2_72
32.6
M2_73
31.7
M2_74
29.9
M2_75
29.9
M2_76
29.5
M2_77
28.6
M2_78
28.5
M2_79
28.5
M2_80
27.9
M2_81
27.8
M2_82
27.4
M2_83
27.1
M2_84
26.9
M2_85
26.2
M2_86
26.1
M2_87
25.6
M2_88
24.6
M2_89
21.6
M2_90
21.3
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