A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
93.9
nTPM
Monaco:
120.8
nTPM
Schmiedel:
31.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.9
HPA sample
nTPM
Memory B-cell nTPM: 93.9
Samples: 6
Max nTPM: 114.4
Min nTPM: 63.7
P10809_1017
63.7
P10809_1025
114.4
P10809_1044
104.8
P10809_1063
93.0
P10809_1092
96.7
P10809_1105
90.9
Naive B-cell nTPM: 89.5
Samples: 6
Max nTPM: 170.7
Min nTPM: 40.9
P10809_1011
40.9
P10809_1029
84.9
P10809_1048
170.7
P10809_1067
72.0
P10809_1091
85.3
P10809_1104
83.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
120.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 101.7
Samples: 4
Max nTPM: 135.6
Min nTPM: 59.6
RHH5310_R3677
119.0
RHH5218_R3590
92.7
RHH5247_R3619
135.6
RHH5276_R3648
59.6
Naive B-cell nTPM: 92.7
Samples: 4
Max nTPM: 113.2
Min nTPM: 53.3
RHH5308_R3675
102.6
RHH5216_R3588
113.2
RHH5245_R3617
53.3
RHH5274_R3646
101.6
Non-switched memory B-cell nTPM: 111.0
Samples: 4
Max nTPM: 139.0
Min nTPM: 79.5
RHH5309_R3676
108.7
RHH5217_R3589
139.0
RHH5246_R3618
116.8
RHH5275_R3647
79.5
Plasmablast nTPM: 120.8
Samples: 4
Max nTPM: 132.0
Min nTPM: 100.0
RHH5312_R3679
132.0
RHH5220_R3592
124.0
RHH5249_R3621
127.2
RHH5278_R3650
100.0
Switched memory B-cell nTPM: 112.6
Samples: 4
Max nTPM: 140.5
Min nTPM: 80.2
RHH5311_R3678
108.3
RHH5219_R3591
121.5
RHH5248_R3620
140.5
RHH5277_R3649
80.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.1
Schmiedel sample id
TPM
Naive B-cell TPM: 31.1
Samples: 91
Max TPM: 40.6
Min TPM: 22.9
B_CELL_NAIVE_1
40.6
B_CELL_NAIVE_2
39.8
B_CELL_NAIVE_3
37.9
B_CELL_NAIVE_4
37.3
B_CELL_NAIVE_5
37.1
B_CELL_NAIVE_6
36.9
B_CELL_NAIVE_7
36.6
B_CELL_NAIVE_8
36.2
B_CELL_NAIVE_9
35.9
B_CELL_NAIVE_10
35.5
B_CELL_NAIVE_11
34.8
B_CELL_NAIVE_12
34.8
B_CELL_NAIVE_13
34.6
B_CELL_NAIVE_14
34.5
B_CELL_NAIVE_15
34.5
B_CELL_NAIVE_16
34.4
B_CELL_NAIVE_17
34.4
B_CELL_NAIVE_18
34.1
B_CELL_NAIVE_19
33.8
B_CELL_NAIVE_20
33.5
B_CELL_NAIVE_21
33.5
B_CELL_NAIVE_22
33.5
B_CELL_NAIVE_23
33.2
B_CELL_NAIVE_24
33.1
B_CELL_NAIVE_25
33.0
B_CELL_NAIVE_26
33.0
B_CELL_NAIVE_27
32.9
B_CELL_NAIVE_28
32.9
B_CELL_NAIVE_29
32.7
B_CELL_NAIVE_30
32.5
B_CELL_NAIVE_31
32.5
B_CELL_NAIVE_32
32.5
B_CELL_NAIVE_33
32.4
B_CELL_NAIVE_34
32.4
B_CELL_NAIVE_35
32.3
B_CELL_NAIVE_36
32.2
B_CELL_NAIVE_37
32.1
B_CELL_NAIVE_38
32.1
B_CELL_NAIVE_39
32.0
B_CELL_NAIVE_40
32.0
B_CELL_NAIVE_41
31.7
B_CELL_NAIVE_42
31.6
B_CELL_NAIVE_43
31.4
B_CELL_NAIVE_44
31.4
B_CELL_NAIVE_45
31.1
B_CELL_NAIVE_46
30.9
B_CELL_NAIVE_47
30.6
B_CELL_NAIVE_48
30.6
B_CELL_NAIVE_49
30.4
B_CELL_NAIVE_50
30.4
B_CELL_NAIVE_51
30.4
B_CELL_NAIVE_52
30.3
B_CELL_NAIVE_53
30.3
B_CELL_NAIVE_54
30.2
B_CELL_NAIVE_55
30.0
B_CELL_NAIVE_56
29.9
B_CELL_NAIVE_57
29.7
B_CELL_NAIVE_58
29.7
B_CELL_NAIVE_59
29.6
B_CELL_NAIVE_60
29.5
B_CELL_NAIVE_61
29.4
B_CELL_NAIVE_62
29.4
B_CELL_NAIVE_63
29.2
B_CELL_NAIVE_64
29.2
B_CELL_NAIVE_65
29.2
B_CELL_NAIVE_66
29.1
B_CELL_NAIVE_67
28.8
B_CELL_NAIVE_68
28.8
B_CELL_NAIVE_69
28.7
B_CELL_NAIVE_70
28.7
B_CELL_NAIVE_71
28.6
B_CELL_NAIVE_72
28.5
B_CELL_NAIVE_73
28.5
B_CELL_NAIVE_74
28.4
B_CELL_NAIVE_75
28.4
B_CELL_NAIVE_76
28.3
B_CELL_NAIVE_77
28.1
B_CELL_NAIVE_78
27.5
B_CELL_NAIVE_79
27.4
B_CELL_NAIVE_80
27.4
B_CELL_NAIVE_81
27.3
B_CELL_NAIVE_82
27.2
B_CELL_NAIVE_83
27.0
B_CELL_NAIVE_84
26.9
B_CELL_NAIVE_85
25.2
B_CELL_NAIVE_86
25.1
B_CELL_NAIVE_87
24.8
B_CELL_NAIVE_88
24.7
B_CELL_NAIVE_89
24.3
B_CELL_NAIVE_90
23.8
B_CELL_NAIVE_91
22.9
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The Human Protein Atlas project is funded
