A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
142.5
nTPM
Monaco:
143.6
nTPM
Schmiedel:
52.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
142.5
HPA sample
nTPM
Classical monocyte nTPM: 130.4
Samples: 6
Max nTPM: 168.6
Min nTPM: 92.6
P10809_1003
92.6
P10809_1020
129.7
P10809_1039
168.6
P10809_1058
113.6
P10809_1080
138.1
P10809_1107
139.9
Intermediate monocyte nTPM: 142.5
Samples: 6
Max nTPM: 169.5
Min nTPM: 105.6
P10809_1004
105.6
P10809_1023
169.5
P10809_1042
128.0
P10809_1061
146.0
P10809_1081
138.0
P10809_1108
168.2
Non-classical monocyte nTPM: 116.6
Samples: 5
Max nTPM: 163.1
Min nTPM: 47.4
P10809_1005
106.3
P10809_1053
139.1
P10809_1072
47.4
P10809_1082
127.1
P10809_1109
163.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
143.6
Monaco sample
nTPM
Classical monocyte nTPM: 143.6
Samples: 4
Max nTPM: 159.7
Min nTPM: 132.9
RHH5313_R3680
144.6
RHH5221_R3593
132.9
RHH5250_R3622
159.7
RHH5279_R3651
137.2
Intermediate monocyte nTPM: 134.3
Samples: 4
Max nTPM: 170.4
Min nTPM: 97.1
RHH5314_R3681
152.8
RHH5222_R3594
97.1
RHH5251_R3623
117.0
RHH5280_R3652
170.4
Non-classical monocyte nTPM: 113.0
Samples: 4
Max nTPM: 153.3
Min nTPM: 66.8
RHH5315_R3682
121.0
RHH5223_R3595
66.8
RHH5252_R3624
111.0
RHH5281_R3653
153.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.1
Schmiedel sample id
TPM
Classical monocyte TPM: 43.6
Samples: 91
Max TPM: 54.4
Min TPM: 34.5
MONOCYTES_1
54.4
MONOCYTES_2
53.4
MONOCYTES_3
52.1
MONOCYTES_4
51.9
MONOCYTES_5
50.2
MONOCYTES_6
50.1
MONOCYTES_7
49.9
MONOCYTES_8
49.5
MONOCYTES_9
49.5
MONOCYTES_10
49.0
MONOCYTES_11
48.9
MONOCYTES_12
48.2
MONOCYTES_13
48.2
MONOCYTES_14
47.9
MONOCYTES_15
47.8
MONOCYTES_16
47.7
MONOCYTES_17
47.5
MONOCYTES_18
47.5
MONOCYTES_19
47.4
MONOCYTES_20
47.3
MONOCYTES_21
47.0
MONOCYTES_22
46.6
MONOCYTES_23
46.6
MONOCYTES_24
46.5
MONOCYTES_25
46.3
MONOCYTES_26
46.0
MONOCYTES_27
46.0
MONOCYTES_28
45.9
MONOCYTES_29
45.8
MONOCYTES_30
45.8
MONOCYTES_31
45.7
MONOCYTES_32
45.4
MONOCYTES_33
45.4
MONOCYTES_34
45.3
MONOCYTES_35
45.2
MONOCYTES_36
45.1
MONOCYTES_37
44.5
MONOCYTES_38
44.4
MONOCYTES_39
44.4
MONOCYTES_40
44.3
MONOCYTES_41
43.9
MONOCYTES_42
43.8
MONOCYTES_43
43.8
MONOCYTES_44
43.8
MONOCYTES_45
43.7
MONOCYTES_46
43.3
MONOCYTES_47
43.3
MONOCYTES_48
43.3
MONOCYTES_49
43.1
MONOCYTES_50
43.1
MONOCYTES_51
43.0
MONOCYTES_52
43.0
MONOCYTES_53
42.8
MONOCYTES_54
42.8
MONOCYTES_55
42.6
MONOCYTES_56
42.3
MONOCYTES_57
42.3
MONOCYTES_58
42.2
MONOCYTES_59
42.2
MONOCYTES_60
42.1
MONOCYTES_61
42.0
MONOCYTES_62
42.0
MONOCYTES_63
41.9
MONOCYTES_64
41.7
MONOCYTES_65
41.2
MONOCYTES_66
40.9
MONOCYTES_67
40.7
MONOCYTES_68
40.7
MONOCYTES_69
40.6
MONOCYTES_70
40.2
MONOCYTES_71
40.1
MONOCYTES_72
40.0
MONOCYTES_73
39.8
MONOCYTES_74
39.5
MONOCYTES_75
39.4
MONOCYTES_76
39.3
MONOCYTES_77
39.0
MONOCYTES_78
38.9
MONOCYTES_79
38.5
MONOCYTES_80
38.5
MONOCYTES_81
38.4
MONOCYTES_82
37.8
MONOCYTES_83
37.5
MONOCYTES_84
37.4
MONOCYTES_85
37.4
MONOCYTES_86
36.4
MONOCYTES_87
36.4
MONOCYTES_88
35.5
MONOCYTES_89
35.5
MONOCYTES_90
35.0
MONOCYTES_91
34.5
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Non-classical monocyte TPM: 52.1
Samples: 90
Max TPM: 62.7
Min TPM: 42.1
M2_1
62.7
M2_2
60.2
M2_3
59.6
M2_4
59.6
M2_5
58.8
M2_6
58.7
M2_7
58.1
M2_8
57.9
M2_9
57.5
M2_10
56.8
M2_11
56.7
M2_12
56.4
M2_13
56.4
M2_14
56.2
M2_15
56.1
M2_16
55.9
M2_17
55.7
M2_18
55.6
M2_19
55.6
M2_20
55.5
M2_21
55.5
M2_22
55.4
M2_23
55.4
M2_24
55.3
M2_25
55.3
M2_26
55.2
M2_27
55.1
M2_28
55.1
M2_29
54.9
M2_30
54.2
M2_31
54.0
M2_32
54.0
M2_33
53.9
M2_34
53.8
M2_35
53.7
M2_36
53.6
M2_37
53.5
M2_38
53.3
M2_39
53.3
M2_40
53.1
M2_41
53.1
M2_42
52.8
M2_43
52.7
M2_44
52.5
M2_45
51.9
M2_46
51.8
M2_47
51.8
M2_48
51.7
M2_49
51.6
M2_50
51.5
M2_51
51.5
M2_52
51.3
M2_53
51.2
M2_54
51.2
M2_55
51.0
M2_56
50.9
M2_57
50.7
M2_58
50.7
M2_59
50.6
M2_60
50.4
M2_61
50.3
M2_62
50.2
M2_63
50.1
M2_64
49.9
M2_65
49.7
M2_66
49.6
M2_67
49.2
M2_68
49.2
M2_69
49.0
M2_70
49.0
M2_71
48.3
M2_72
48.3
M2_73
48.3
M2_74
48.2
M2_75
47.7
M2_76
47.6
M2_77
47.3
M2_78
47.3
M2_79
47.3
M2_80
46.7
M2_81
46.7
M2_82
46.5
M2_83
46.4
M2_84
45.9
M2_85
45.8
M2_86
44.8
M2_87
44.0
M2_88
42.9
M2_89
42.9
M2_90
42.1
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