MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.2 nTPM
HPA Brain:58.0 nTPM
GTEx:23.2 nTPM
FANTOM5:74.3 Scaled Tags Per Million
Pig:81.4 nTPM
Mouse:47.9 nTPM
Allen mouse:10.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 58.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.4
2019 Male, age 18, unknown 54.2
1827 Male, age 72, unknown 53.7
1870 Female, age 42, unknown 53.5
2666 Male, age 74, left hemisphere 53.4
1833 Male, age 53, unknown 53.3
2586 Male, age 75, left hemisphere 53.2
2219 Male, age 76, both hemispheres 52.2
1830 Male, age 51, unknown 51.3
2828 Female, age 72, unknown 50.3
2411 Female, age 72, unknown 49.1
Dorsal raphe nucleus
nTPM: 52.6
2298 Female, age 72, unknown 56.8
2016 Female, age 72, unknown 53.0
1828 Male, age 53, unknown 52.2
2750 Male, age 76, both hemispheres 51.9
2047 Male, age 72, unknown 49.1
Inferior colliculus
nTPM: 52.1
2849 Male, age 72, unknown 55.2
2097 Female, age 72, unknown 52.9
1848 Female, age 42, unknown 50.3
1890 Male, age 53, unknown 50.1
Median raphe nucleus
nTPM: 56.8
2220 Male, age 76, midline 56.8
Periaquaductal grey, anterior
nTPM: 58.0
1947 Male, age 18, unknown 58.9
2502 Female, age 75, unknown 57.6
1795 Male, age 51, unknown 57.4
Periaquaductal grey, dorsal
nTPM: 54.0
2850 Male, age 76, both hemispheres 61.5
1831 Male, age 72, unknown 52.2
1840 Male, age 53, unknown 52.0
2464 Female, age 72, unknown 50.1
Periaquaductal grey, lateral
nTPM: 57.1
2272 Male, age 74, both hemispheres 62.2
2140 Male, age 76, both hemispheres 56.8
2053 Male, age 18, unknown 52.3
Pretectal area
nTPM: 56.1
2273 Male, age 74, both hemispheres 62.2
2667 Female, age 75, unknown 59.8
1816 Male, age 51, unknown 59.0
1815 Male, age 53, unknown 58.0
1817 Female, age 42, unknown 56.9
2224 Female, age 72, unknown 56.3
2825 Male, age 18, unknown 54.5
2007 Male, age 72, unknown 53.8
2407 Male, age 75, both hemispheres 53.2
1944 Female, age 72, unknown 51.7
2316 Male, age 76, right hemisphere 51.6
Red nucleus
nTPM: 54.3
1821 Female, age 72, unknown 58.3
2725 Female, age 75, unknown 58.2
2503 Female, age 72, unknown 57.2
1904 Male, age 53, unknown 55.7
1865 Male, age 51, unknown 55.6
1954 Female, age 42, unknown 54.3
2785 Male, age 18, unknown 53.3
2584 Male, age 75, left hemisphere 52.3
2588 Male, age 74, left hemisphere 52.3
2823 Male, age 76, right hemisphere 51.8
2227 Male, age 72, unknown 51.6
2769 Male, age 72, unknown 51.3
Substantia nigra
nTPM: 56.2
2241 Male, age 72, unknown 64.6
1916 Female, age 42, unknown 59.2
1851 Male, age 51, unknown 56.6
2699 Male, age 18, unknown 56.6
1941 Male, age 53, unknown 55.8
2409 Female, age 72, unknown 54.9
2665 Male, age 74, both hemispheres 54.2
2590 Female, age 75, unknown 53.8
2583 Male, age 75, right hemisphere 53.2
1889 Female, age 72, unknown 52.7
Superior colliculus
nTPM: 53.0
1913 Female, age 42, unknown 57.2
2261 Male, age 18, unknown 56.8
2587 Male, age 74, left hemisphere 54.1
1995 Male, age 72, unknown 54.0
1796 Male, age 53, unknown 53.5
1839 Male, age 51, unknown 53.1
2087 Female, age 72, unknown 51.7
2664 Male, age 75, both hemispheres 51.4
1895 Male, age 76, right hemisphere 49.6
2668 Female, age 75, unknown 48.5
Ventral tegmental area
nTPM: 54.0
2218 Male, age 76, both hemispheres 57.0
2223 Female, age 72, unknown 55.5
1915 Female, age 42, unknown 55.3
2021 Male, age 53, unknown 53.6
2410 Female, age 72, unknown 51.3
1942 Male, age 51, unknown 50.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.2
Samples: 183

Max nTPM: 34.7
Min nTPM: 15.0
Std nTPM: 3.2
Median nTPM: 23.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 34.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 31.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 30.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 29.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 29.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 29.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 29.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 28.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 28.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 28.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 74.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.3
FF:10158-103A5 76 years, female 74.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 81.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.4
Samples: 4

Max nTPM: 81.5
Min nTPM: 73.7
Sample A Female 81.5
Sample B Female 74.8
Sample C Male 79.4
Sample D Male 73.7
Midbrain
nTPM: 81.4
Samples: 4

Max nTPM: 98.0
Min nTPM: 72.6
Sample A Female 98.0
Sample B Female 78.7
Sample C Male 76.3
Sample D Male 72.6
Periaqueductal gray
nTPM: 78.2
Samples: 3

Max nTPM: 85.3
Min nTPM: 71.1
Sample B Female 78.2
Sample C Male 85.3
Sample D Male 71.1
Superior colliculi
nTPM: 79.5
Samples: 4

Max nTPM: 85.5
Min nTPM: 72.7
Sample A Female 85.5
Sample B Female 72.7
Sample C Male 79.3
Sample D Male 80.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 47.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.0
Samples: 4

Max nTPM: 50.2
Min nTPM: 44.7
Sample A Male 44.7
Sample B Male 47.6
Sample C Female 50.2
Sample D Female 49.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
70445263 Antisense, RP_050614_03_D05, Mouse strain C57BL/6J (56 days, male) 14.2
71210166 Antisense, RP_050810_03_F05, Mouse strain C57BL/6J (56 days, male) 7.2

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