A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
61.2
nTPM
Monaco:
158.7
nTPM
Schmiedel:
160.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.2
HPA sample
nTPM
Memory B-cell nTPM: 53.8
Samples: 6
Max nTPM: 72.5
Min nTPM: 31.4
P10809_1017
31.4
P10809_1025
45.9
P10809_1044
72.5
P10809_1063
60.6
P10809_1092
62.2
P10809_1105
50.1
Naive B-cell nTPM: 61.2
Samples: 6
Max nTPM: 86.2
Min nTPM: 34.2
P10809_1011
34.2
P10809_1029
54.0
P10809_1048
86.2
P10809_1067
67.5
P10809_1091
66.3
P10809_1104
59.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
158.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 124.0
Samples: 4
Max nTPM: 148.2
Min nTPM: 100.5
RHH5310_R3677
109.4
RHH5218_R3590
138.0
RHH5247_R3619
148.2
RHH5276_R3648
100.5
Naive B-cell nTPM: 158.7
Samples: 4
Max nTPM: 195.1
Min nTPM: 128.6
RHH5308_R3675
152.4
RHH5216_R3588
158.6
RHH5245_R3617
128.6
RHH5274_R3646
195.1
Non-switched memory B-cell nTPM: 129.2
Samples: 4
Max nTPM: 156.5
Min nTPM: 104.8
RHH5309_R3676
104.8
RHH5217_R3589
139.8
RHH5246_R3618
156.5
RHH5275_R3647
115.7
Plasmablast nTPM: 116.7
Samples: 4
Max nTPM: 123.7
Min nTPM: 108.2
RHH5312_R3679
108.2
RHH5220_R3592
123.7
RHH5249_R3621
120.4
RHH5278_R3650
114.4
Switched memory B-cell nTPM: 124.7
Samples: 4
Max nTPM: 150.0
Min nTPM: 97.4
RHH5311_R3678
97.4
RHH5219_R3591
150.0
RHH5248_R3620
144.2
RHH5277_R3649
107.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
160.1
Schmiedel sample id
TPM
Naive B-cell TPM: 160.1
Samples: 91
Max TPM: 217.5
Min TPM: 89.7
B_CELL_NAIVE_1
217.5
B_CELL_NAIVE_2
210.4
B_CELL_NAIVE_3
199.0
B_CELL_NAIVE_4
196.9
B_CELL_NAIVE_5
196.6
B_CELL_NAIVE_6
195.1
B_CELL_NAIVE_7
195.0
B_CELL_NAIVE_8
193.5
B_CELL_NAIVE_9
193.3
B_CELL_NAIVE_10
190.8
B_CELL_NAIVE_11
189.4
B_CELL_NAIVE_12
188.4
B_CELL_NAIVE_13
186.8
B_CELL_NAIVE_14
186.5
B_CELL_NAIVE_15
186.5
B_CELL_NAIVE_16
182.9
B_CELL_NAIVE_17
182.6
B_CELL_NAIVE_18
182.1
B_CELL_NAIVE_19
182.0
B_CELL_NAIVE_20
181.9
B_CELL_NAIVE_21
181.6
B_CELL_NAIVE_22
180.9
B_CELL_NAIVE_23
180.6
B_CELL_NAIVE_24
179.3
B_CELL_NAIVE_25
179.1
B_CELL_NAIVE_26
179.1
B_CELL_NAIVE_27
178.9
B_CELL_NAIVE_28
178.5
B_CELL_NAIVE_29
177.8
B_CELL_NAIVE_30
173.9
B_CELL_NAIVE_31
173.2
B_CELL_NAIVE_32
173.0
B_CELL_NAIVE_33
170.0
B_CELL_NAIVE_34
168.8
B_CELL_NAIVE_35
168.5
B_CELL_NAIVE_36
166.8
B_CELL_NAIVE_37
166.1
B_CELL_NAIVE_38
162.9
B_CELL_NAIVE_39
162.8
B_CELL_NAIVE_40
162.3
B_CELL_NAIVE_41
161.0
B_CELL_NAIVE_42
160.9
B_CELL_NAIVE_43
160.9
B_CELL_NAIVE_44
160.9
B_CELL_NAIVE_45
159.5
B_CELL_NAIVE_46
159.0
B_CELL_NAIVE_47
158.6
B_CELL_NAIVE_48
156.6
B_CELL_NAIVE_49
156.5
B_CELL_NAIVE_50
155.8
B_CELL_NAIVE_51
154.9
B_CELL_NAIVE_52
154.7
B_CELL_NAIVE_53
153.1
B_CELL_NAIVE_54
152.7
B_CELL_NAIVE_55
152.0
B_CELL_NAIVE_56
150.5
B_CELL_NAIVE_57
149.6
B_CELL_NAIVE_58
149.2
B_CELL_NAIVE_59
148.2
B_CELL_NAIVE_60
147.7
B_CELL_NAIVE_61
147.4
B_CELL_NAIVE_62
147.4
B_CELL_NAIVE_63
147.3
B_CELL_NAIVE_64
147.3
B_CELL_NAIVE_65
145.0
B_CELL_NAIVE_66
144.9
B_CELL_NAIVE_67
144.6
B_CELL_NAIVE_68
144.1
B_CELL_NAIVE_69
143.2
B_CELL_NAIVE_70
143.0
B_CELL_NAIVE_71
142.5
B_CELL_NAIVE_72
141.8
B_CELL_NAIVE_73
140.7
B_CELL_NAIVE_74
138.5
B_CELL_NAIVE_75
137.6
B_CELL_NAIVE_76
136.8
B_CELL_NAIVE_77
135.6
B_CELL_NAIVE_78
135.4
B_CELL_NAIVE_79
134.5
B_CELL_NAIVE_80
134.2
B_CELL_NAIVE_81
133.7
B_CELL_NAIVE_82
133.0
B_CELL_NAIVE_83
131.1
B_CELL_NAIVE_84
127.1
B_CELL_NAIVE_85
123.9
B_CELL_NAIVE_86
123.8
B_CELL_NAIVE_87
121.2
B_CELL_NAIVE_88
118.8
B_CELL_NAIVE_89
114.8
B_CELL_NAIVE_90
112.3
B_CELL_NAIVE_91
89.7
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