A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
48.8
nTPM
Monaco:
107.5
nTPM
Schmiedel:
91.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.8
HPA sample
nTPM
Classical monocyte nTPM: 37.0
Samples: 6
Max nTPM: 44.6
Min nTPM: 28.6
P10809_1003
28.6
P10809_1020
30.1
P10809_1039
41.7
P10809_1058
42.1
P10809_1080
44.6
P10809_1107
34.7
Intermediate monocyte nTPM: 44.0
Samples: 6
Max nTPM: 78.9
Min nTPM: 31.3
P10809_1004
34.8
P10809_1023
31.3
P10809_1042
44.8
P10809_1061
78.9
P10809_1081
41.4
P10809_1108
32.6
Non-classical monocyte nTPM: 48.8
Samples: 5
Max nTPM: 91.1
Min nTPM: 25.5
P10809_1005
25.5
P10809_1053
45.0
P10809_1072
91.1
P10809_1082
47.1
P10809_1109
35.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.5
Monaco sample
nTPM
Classical monocyte nTPM: 107.5
Samples: 4
Max nTPM: 127.4
Min nTPM: 90.6
RHH5313_R3680
94.8
RHH5221_R3593
90.6
RHH5250_R3622
117.1
RHH5279_R3651
127.4
Intermediate monocyte nTPM: 101.3
Samples: 4
Max nTPM: 128.8
Min nTPM: 70.3
RHH5314_R3681
114.1
RHH5222_R3594
70.3
RHH5251_R3623
91.8
RHH5280_R3652
128.8
Non-classical monocyte nTPM: 91.3
Samples: 4
Max nTPM: 114.6
Min nTPM: 75.9
RHH5315_R3682
88.5
RHH5223_R3595
75.9
RHH5252_R3624
86.1
RHH5281_R3653
114.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.4
Schmiedel sample id
TPM
Classical monocyte TPM: 60.1
Samples: 91
Max TPM: 84.2
Min TPM: 45.0
MONOCYTES_1
84.2
MONOCYTES_2
75.4
MONOCYTES_3
73.6
MONOCYTES_4
72.0
MONOCYTES_5
70.7
MONOCYTES_6
70.5
MONOCYTES_7
69.0
MONOCYTES_8
68.8
MONOCYTES_9
68.4
MONOCYTES_10
68.2
MONOCYTES_11
67.3
MONOCYTES_12
67.1
MONOCYTES_13
66.9
MONOCYTES_14
65.7
MONOCYTES_15
65.2
MONOCYTES_16
65.0
MONOCYTES_17
64.8
MONOCYTES_18
64.8
MONOCYTES_19
64.4
MONOCYTES_20
64.3
MONOCYTES_21
64.1
MONOCYTES_22
64.0
MONOCYTES_23
63.7
MONOCYTES_24
63.2
MONOCYTES_25
63.1
MONOCYTES_26
62.9
MONOCYTES_27
62.8
MONOCYTES_28
62.8
MONOCYTES_29
62.7
MONOCYTES_30
62.5
MONOCYTES_31
62.4
MONOCYTES_32
61.8
MONOCYTES_33
61.7
MONOCYTES_34
61.7
MONOCYTES_35
61.6
MONOCYTES_36
61.6
MONOCYTES_37
61.5
MONOCYTES_38
61.4
MONOCYTES_39
61.0
MONOCYTES_40
60.7
MONOCYTES_41
60.7
MONOCYTES_42
59.9
MONOCYTES_43
59.8
MONOCYTES_44
59.5
MONOCYTES_45
59.4
MONOCYTES_46
59.4
MONOCYTES_47
59.1
MONOCYTES_48
59.0
MONOCYTES_49
58.5
MONOCYTES_50
58.5
MONOCYTES_51
58.1
MONOCYTES_52
58.1
MONOCYTES_53
57.9
MONOCYTES_54
57.9
MONOCYTES_55
57.9
MONOCYTES_56
57.6
MONOCYTES_57
57.5
MONOCYTES_58
57.4
MONOCYTES_59
57.1
MONOCYTES_60
57.1
MONOCYTES_61
57.0
MONOCYTES_62
57.0
MONOCYTES_63
56.7
MONOCYTES_64
56.6
MONOCYTES_65
56.4
MONOCYTES_66
56.3
MONOCYTES_67
56.2
MONOCYTES_68
56.1
MONOCYTES_69
56.1
MONOCYTES_70
56.0
MONOCYTES_71
56.0
MONOCYTES_72
55.9
MONOCYTES_73
55.7
MONOCYTES_74
55.6
MONOCYTES_75
55.3
MONOCYTES_76
55.3
MONOCYTES_77
55.1
MONOCYTES_78
55.0
MONOCYTES_79
54.8
MONOCYTES_80
54.4
MONOCYTES_81
53.8
MONOCYTES_82
53.7
MONOCYTES_83
53.4
MONOCYTES_84
51.7
MONOCYTES_85
51.6
MONOCYTES_86
51.2
MONOCYTES_87
51.0
MONOCYTES_88
50.3
MONOCYTES_89
50.2
MONOCYTES_90
48.1
MONOCYTES_91
45.0
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Non-classical monocyte TPM: 91.4
Samples: 90
Max TPM: 110.9
Min TPM: 72.0
M2_1
110.9
M2_2
109.5
M2_3
107.5
M2_4
105.9
M2_5
104.8
M2_6
103.1
M2_7
102.8
M2_8
102.8
M2_9
99.5
M2_10
99.5
M2_11
99.4
M2_12
99.4
M2_13
98.9
M2_14
98.9
M2_15
98.3
M2_16
97.6
M2_17
97.5
M2_18
97.4
M2_19
97.4
M2_20
97.3
M2_21
97.2
M2_22
97.1
M2_23
96.7
M2_24
96.4
M2_25
96.1
M2_26
95.3
M2_27
95.2
M2_28
95.2
M2_29
95.0
M2_30
94.7
M2_31
94.4
M2_32
94.2
M2_33
94.2
M2_34
94.1
M2_35
93.9
M2_36
93.1
M2_37
92.9
M2_38
92.9
M2_39
92.7
M2_40
92.2
M2_41
92.2
M2_42
92.1
M2_43
91.4
M2_44
91.3
M2_45
90.9
M2_46
90.9
M2_47
90.7
M2_48
90.6
M2_49
90.3
M2_50
90.3
M2_51
90.1
M2_52
90.0
M2_53
90.0
M2_54
89.8
M2_55
89.7
M2_56
89.6
M2_57
89.4
M2_58
89.3
M2_59
89.1
M2_60
89.1
M2_61
88.8
M2_62
88.4
M2_63
87.8
M2_64
87.3
M2_65
86.7
M2_66
86.4
M2_67
86.3
M2_68
86.1
M2_69
85.6
M2_70
85.3
M2_71
85.3
M2_72
84.9
M2_73
84.0
M2_74
83.8
M2_75
83.8
M2_76
83.2
M2_77
82.9
M2_78
82.6
M2_79
82.1
M2_80
81.9
M2_81
81.5
M2_82
81.4
M2_83
81.4
M2_84
80.6
M2_85
80.3
M2_86
80.0
M2_87
78.6
M2_88
77.8
M2_89
77.3
M2_90
72.0
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