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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:255.5 nTPM
HPA Brain:86.5 nTPM
GTEx:255.5 nTPM
FANTOM5:52.8 Scaled Tags Per Million
Mouse:67.6 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.5
Sample id Sample description nTPM
Amygdala
nTPM: 86.5
2514 Male, age 75, right hemisphere 94.8
1987 Female, age 91, left hemisphere 87.4
2517 Female, age 94, left hemisphere 85.2
2695 Female, age 67, right hemisphere 83.8
2814 Male, age 76, right hemisphere 81.2
Basal amygdala
nTPM: 67.1
2609 Male, age 75, right hemisphere 85.8
2243 Female, age 91, right hemisphere 74.7
2110 Male, age 80, left hemisphere 71.2
1955 Male, age 76, both hemispheres 69.8
2685 Female, age 94, left hemisphere 63.6
2827 Female, age 67, right hemisphere 37.8
Central amygdala
nTPM: 76.9
2826 Female, age 94, left hemisphere 91.1
2515 Male, age 75, right hemisphere 86.1
1905 Male, age 76, both hemispheres 80.4
2239 Male, age 80, left hemisphere 69.0
2701 Female, age 91, right hemisphere 58.0
Corticomedial amygdala
nTPM: 68.7
2428 Male, age 75, right hemisphere 89.2
2829 Male, age 80, left hemisphere 81.0
2429 Female, age 94, left hemisphere 72.6
2242 Female, age 91, right hemisphere 71.6
2240 Male, age 76, both hemispheres 55.6
2535 Female, age 67, right hemisphere 42.4
Lateral amygdala
nTPM: 66.1
2516 Male, age 75, right hemisphere 82.6
2534 Female, age 94, left hemisphere 77.3
1883 Male, age 76, both hemispheres 69.1
2256 Male, age 80, left hemisphere 64.1
2255 Female, age 91, right hemisphere 57.9
2830 Female, age 67, right hemisphere 45.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

255.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 255.5
Samples: 181

Max nTPM: 781.9
Min nTPM: 117.5
Std nTPM: 92.2
Median nTPM: 240.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 781.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 603.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 589.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 565.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 564.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 519.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 452.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 451.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 413.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 413.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 404.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 394.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 384.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 371.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 368.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 367.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 362.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 351.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 345.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 339.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 339.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 336.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 336.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 335.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 330.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 323.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 322.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 322.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 322.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 316.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 311.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 308.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 306.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 306.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 304.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 303.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 300.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 299.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 297.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 297.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 295.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 294.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 292.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 289.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 282.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 282.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 277.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 276.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 275.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 274.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 273.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 272.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 270.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 269.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 267.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 266.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 265.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 264.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 264.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 264.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 264.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 263.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 263.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 262.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 261.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 259.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 259.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 258.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 257.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 257.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 256.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 256.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 256.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 256.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 255.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 255.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 254.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 253.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 253.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 248.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 248.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 247.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 247.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 243.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 243.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 243.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 243.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 242.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 242.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 240.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 240.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 240.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 239.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 239.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 238.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 238.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 237.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 236.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 236.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 235.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 235.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 232.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 230.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 229.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 228.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 227.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 227.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 225.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 225.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 224.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 223.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 223.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 223.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 222.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 221.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 217.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 216.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 216.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 215.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 213.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 212.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 212.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 212.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 211.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 211.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 211.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 208.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 207.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 206.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 203.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 202.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 202.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 201.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 199.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 198.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 198.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 198.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 197.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 196.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 195.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 191.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 191.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 191.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 190.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 190.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 190.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 187.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 185.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 185.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 182.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 181.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 180.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 180.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 179.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 176.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 175.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 175.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 174.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 174.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 173.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 169.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 168.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 165.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 165.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 164.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 164.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 163.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 163.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 161.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 160.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 156.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 145.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 144.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 139.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 139.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 135.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 134.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 134.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 133.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 129.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 117.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

52.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 52.8
FF:10151-102I7 76 years, female 52.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 67.6
Samples: 4

Max nTPM: 71.6
Min nTPM: 61.8
Sample A Male 61.8
Sample B Male 69.8
Sample C Female 71.6
Sample D Female 67.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.6
68523195 Antisense, RP_050118_02_C09, Mouse strain C57BL/6J (56 days, male) 0.6

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