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  • PHPT1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:209.2 nTPM
HPA Brain:92.0 nTPM
GTEx:209.2 nTPM
FANTOM5:33.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 92.0
1981 Female, age 72, midline 131.4
2565 Male, age 75, midline 102.1
2816 Male, age 47, midline 82.5
2194 Female, age 79, both hemispheres 74.2
2048 Male, age 55, midline 69.9
Cervical spinal cord, dorsal horn
nTPM: 90.0
2173 Female, age 72, unknown 131.2
2296 Male, age 66, both hemispheres 129.3
2069 Male, age 47, both hemispheres 91.2
1877 Male, age 55, unknown 72.9
2721 Male, age 90, both hemispheres 61.8
2297 Male, age 75, both hemispheres 53.5
Cervical spinal cord, ventral horn
nTPM: 88.9
2098 Female, age 72, unknown 138.8
2480 Male, age 75, both hemispheres 90.9
2295 Male, age 66, both hemispheres 90.8
2809 Male, age 90, both hemispheres 90.2
2068 Male, age 55, unknown 65.7
2820 Female, age 79, both hemispheres 56.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

209.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 209.2
Samples: 204

Max nTPM: 450.8
Min nTPM: 78.4
Std nTPM: 59.5
Median nTPM: 203.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 450.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 413.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 382.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 350.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 344.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 341.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 334.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 329.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 329.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 325.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 323.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 321.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 319.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 316.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 306.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 299.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 299.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 299.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 292.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 290.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 288.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 285.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 285.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 285.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 275.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 272.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 269.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 269.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 267.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 266.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 266.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 264.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 262.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 261.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 261.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 256.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 255.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 254.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 253.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 252.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 251.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 250.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 249.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 248.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 248.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 248.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 246.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 246.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 245.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 242.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 239.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 238.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 237.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 235.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 235.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 235.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 234.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 233.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 232.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 232.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 231.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 231.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 230.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 230.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 230.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 228.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 227.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 224.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 224.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 224.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 223.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 222.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 221.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 221.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 220.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 220.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 219.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 219.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 219.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 219.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 219.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 218.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 218.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 218.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 217.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 215.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 215.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 213.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 213.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 211.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 211.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 210.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 210.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 209.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 209.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 208.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 208.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 206.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 205.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 204.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 204.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 203.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 203.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 201.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 200.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 198.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 197.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 197.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 194.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 194.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 193.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 193.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 193.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 191.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 191.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 190.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 190.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 189.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 189.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 189.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 189.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 188.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 187.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 187.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 186.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 186.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 186.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 185.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 185.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 184.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 184.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 182.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 182.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 182.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 182.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 181.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 181.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 181.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 180.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 177.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 174.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 173.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 173.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 172.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 172.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 171.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 169.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 169.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 169.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 168.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 167.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 167.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 167.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 166.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 166.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 166.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 165.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 164.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 164.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 163.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 163.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 162.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 160.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 158.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 156.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 156.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 155.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 155.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 155.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 154.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 154.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 153.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 152.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 151.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 148.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 148.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 147.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 147.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 147.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 146.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 145.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 145.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 143.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 142.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 142.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 142.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 139.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 139.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 137.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 132.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 131.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 130.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 128.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 128.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 127.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 123.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 123.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 123.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 122.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 113.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 108.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 96.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 88.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 78.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 33.6
FF:10159-103A6 76 years, female 38.0
FF:10181-103D1 60 years, female 29.2

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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