A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
34.2
nTPM
Monaco:
140.7
nTPM
Schmiedel:
83.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.2
HPA sample
nTPM
Memory B-cell nTPM: 32.4
Samples: 6
Max nTPM: 59.9
Min nTPM: 15.2
P10809_1017
15.2
P10809_1025
23.1
P10809_1044
59.9
P10809_1063
40.3
P10809_1092
36.9
P10809_1105
18.8
Naive B-cell nTPM: 34.2
Samples: 6
Max nTPM: 48.6
Min nTPM: 17.0
P10809_1011
17.0
P10809_1029
35.6
P10809_1048
44.4
P10809_1067
48.6
P10809_1091
32.6
P10809_1104
27.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
140.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 124.2
Samples: 4
Max nTPM: 157.7
Min nTPM: 75.6
RHH5310_R3677
75.6
RHH5218_R3590
144.2
RHH5247_R3619
157.7
RHH5276_R3648
119.2
Naive B-cell nTPM: 140.8
Samples: 4
Max nTPM: 157.4
Min nTPM: 124.6
RHH5308_R3675
152.3
RHH5216_R3588
124.6
RHH5245_R3617
128.7
RHH5274_R3646
157.4
Non-switched memory B-cell nTPM: 137.1
Samples: 4
Max nTPM: 185.7
Min nTPM: 86.3
RHH5309_R3676
86.3
RHH5217_R3589
156.8
RHH5246_R3618
185.7
RHH5275_R3647
119.6
Plasmablast nTPM: 52.5
Samples: 4
Max nTPM: 62.5
Min nTPM: 36.1
RHH5312_R3679
62.5
RHH5220_R3592
36.1
RHH5249_R3621
62.3
RHH5278_R3650
49.2
Switched memory B-cell nTPM: 136.1
Samples: 4
Max nTPM: 167.1
Min nTPM: 82.0
RHH5311_R3678
82.0
RHH5219_R3591
152.9
RHH5248_R3620
167.1
RHH5277_R3649
142.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.2
Schmiedel sample id
TPM
Naive B-cell TPM: 83.2
Samples: 91
Max TPM: 137.5
Min TPM: 57.5
B_CELL_NAIVE_1
137.5
B_CELL_NAIVE_2
128.8
B_CELL_NAIVE_3
122.1
B_CELL_NAIVE_4
117.5
B_CELL_NAIVE_5
116.1
B_CELL_NAIVE_6
112.4
B_CELL_NAIVE_7
108.6
B_CELL_NAIVE_8
108.0
B_CELL_NAIVE_9
105.5
B_CELL_NAIVE_10
103.6
B_CELL_NAIVE_11
102.7
B_CELL_NAIVE_12
96.4
B_CELL_NAIVE_13
96.3
B_CELL_NAIVE_14
95.1
B_CELL_NAIVE_15
93.5
B_CELL_NAIVE_16
92.3
B_CELL_NAIVE_17
92.2
B_CELL_NAIVE_18
92.0
B_CELL_NAIVE_19
91.5
B_CELL_NAIVE_20
89.8
B_CELL_NAIVE_21
89.8
B_CELL_NAIVE_22
89.2
B_CELL_NAIVE_23
89.0
B_CELL_NAIVE_24
88.9
B_CELL_NAIVE_25
88.8
B_CELL_NAIVE_26
88.5
B_CELL_NAIVE_27
88.2
B_CELL_NAIVE_28
87.8
B_CELL_NAIVE_29
87.3
B_CELL_NAIVE_30
86.7
B_CELL_NAIVE_31
86.2
B_CELL_NAIVE_32
85.9
B_CELL_NAIVE_33
85.4
B_CELL_NAIVE_34
85.1
B_CELL_NAIVE_35
84.7
B_CELL_NAIVE_36
84.7
B_CELL_NAIVE_37
84.6
B_CELL_NAIVE_38
84.4
B_CELL_NAIVE_39
84.0
B_CELL_NAIVE_40
82.9
B_CELL_NAIVE_41
82.9
B_CELL_NAIVE_42
82.6
B_CELL_NAIVE_43
82.1
B_CELL_NAIVE_44
81.7
B_CELL_NAIVE_45
81.4
B_CELL_NAIVE_46
80.6
B_CELL_NAIVE_47
80.4
B_CELL_NAIVE_48
80.4
B_CELL_NAIVE_49
80.2
B_CELL_NAIVE_50
79.9
B_CELL_NAIVE_51
79.9
B_CELL_NAIVE_52
79.8
B_CELL_NAIVE_53
79.7
B_CELL_NAIVE_54
79.5
B_CELL_NAIVE_55
79.5
B_CELL_NAIVE_56
79.4
B_CELL_NAIVE_57
79.4
B_CELL_NAIVE_58
78.5
B_CELL_NAIVE_59
76.4
B_CELL_NAIVE_60
76.2
B_CELL_NAIVE_61
75.4
B_CELL_NAIVE_62
75.4
B_CELL_NAIVE_63
74.9
B_CELL_NAIVE_64
74.2
B_CELL_NAIVE_65
74.2
B_CELL_NAIVE_66
74.1
B_CELL_NAIVE_67
72.8
B_CELL_NAIVE_68
72.8
B_CELL_NAIVE_69
72.3
B_CELL_NAIVE_70
72.0
B_CELL_NAIVE_71
71.7
B_CELL_NAIVE_72
71.5
B_CELL_NAIVE_73
70.9
B_CELL_NAIVE_74
70.3
B_CELL_NAIVE_75
70.3
B_CELL_NAIVE_76
69.9
B_CELL_NAIVE_77
69.4
B_CELL_NAIVE_78
68.9
B_CELL_NAIVE_79
68.1
B_CELL_NAIVE_80
67.8
B_CELL_NAIVE_81
67.3
B_CELL_NAIVE_82
66.2
B_CELL_NAIVE_83
66.1
B_CELL_NAIVE_84
66.1
B_CELL_NAIVE_85
64.2
B_CELL_NAIVE_86
64.0
B_CELL_NAIVE_87
63.7
B_CELL_NAIVE_88
63.0
B_CELL_NAIVE_89
62.9
B_CELL_NAIVE_90
62.1
B_CELL_NAIVE_91
57.5
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The Human Protein Atlas project is funded
