A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.8
nTPM
Monaco:
113.1
nTPM
Schmiedel:
42.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.8
HPA sample
nTPM
Classical monocyte nTPM: 13.7
Samples: 6
Max nTPM: 19.5
Min nTPM: 9.3
P10809_1003
9.3
P10809_1020
13.5
P10809_1039
17.8
P10809_1058
19.5
P10809_1080
13.0
P10809_1107
9.3
Intermediate monocyte nTPM: 15.1
Samples: 6
Max nTPM: 26.3
Min nTPM: 4.8
P10809_1004
9.4
P10809_1023
13.5
P10809_1042
16.7
P10809_1061
26.3
P10809_1081
19.8
P10809_1108
4.8
Non-classical monocyte nTPM: 25.8
Samples: 5
Max nTPM: 51.4
Min nTPM: 8.2
P10809_1005
8.2
P10809_1053
18.2
P10809_1072
51.4
P10809_1082
36.5
P10809_1109
14.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.1
Monaco sample
nTPM
Classical monocyte nTPM: 93.2
Samples: 4
Max nTPM: 106.7
Min nTPM: 81.7
RHH5313_R3680
100.7
RHH5221_R3593
81.7
RHH5250_R3622
83.7
RHH5279_R3651
106.7
Intermediate monocyte nTPM: 97.2
Samples: 4
Max nTPM: 114.1
Min nTPM: 73.2
RHH5314_R3681
95.8
RHH5222_R3594
73.2
RHH5251_R3623
105.6
RHH5280_R3652
114.1
Non-classical monocyte nTPM: 113.1
Samples: 4
Max nTPM: 130.2
Min nTPM: 95.1
RHH5315_R3682
117.6
RHH5223_R3595
95.1
RHH5252_R3624
109.5
RHH5281_R3653
130.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.6
Schmiedel sample id
TPM
Classical monocyte TPM: 27.4
Samples: 91
Max TPM: 35.0
Min TPM: 20.4
MONOCYTES_1
35.0
MONOCYTES_2
34.5
MONOCYTES_3
33.0
MONOCYTES_4
32.9
MONOCYTES_5
32.6
MONOCYTES_6
32.6
MONOCYTES_7
32.5
MONOCYTES_8
32.0
MONOCYTES_9
31.9
MONOCYTES_10
31.5
MONOCYTES_11
31.4
MONOCYTES_12
31.2
MONOCYTES_13
31.0
MONOCYTES_14
30.9
MONOCYTES_15
30.6
MONOCYTES_16
30.3
MONOCYTES_17
30.3
MONOCYTES_18
30.3
MONOCYTES_19
30.3
MONOCYTES_20
30.3
MONOCYTES_21
30.0
MONOCYTES_22
29.8
MONOCYTES_23
29.7
MONOCYTES_24
29.7
MONOCYTES_25
29.3
MONOCYTES_26
29.3
MONOCYTES_27
29.3
MONOCYTES_28
29.1
MONOCYTES_29
29.0
MONOCYTES_30
29.0
MONOCYTES_31
29.0
MONOCYTES_32
28.9
MONOCYTES_33
28.7
MONOCYTES_34
28.4
MONOCYTES_35
28.0
MONOCYTES_36
27.8
MONOCYTES_37
27.8
MONOCYTES_38
27.7
MONOCYTES_39
27.5
MONOCYTES_40
27.5
MONOCYTES_41
27.3
MONOCYTES_42
27.3
MONOCYTES_43
27.2
MONOCYTES_44
27.2
MONOCYTES_45
27.2
MONOCYTES_46
27.1
MONOCYTES_47
27.1
MONOCYTES_48
26.9
MONOCYTES_49
26.8
MONOCYTES_50
26.8
MONOCYTES_51
26.5
MONOCYTES_52
26.4
MONOCYTES_53
26.3
MONOCYTES_54
26.2
MONOCYTES_55
26.2
MONOCYTES_56
26.2
MONOCYTES_57
26.1
MONOCYTES_58
26.0
MONOCYTES_59
25.9
MONOCYTES_60
25.9
MONOCYTES_61
25.8
MONOCYTES_62
25.7
MONOCYTES_63
25.3
MONOCYTES_64
25.3
MONOCYTES_65
25.3
MONOCYTES_66
25.1
MONOCYTES_67
25.1
MONOCYTES_68
25.0
MONOCYTES_69
24.9
MONOCYTES_70
24.8
MONOCYTES_71
24.8
MONOCYTES_72
24.8
MONOCYTES_73
24.7
MONOCYTES_74
24.6
MONOCYTES_75
24.6
MONOCYTES_76
24.4
MONOCYTES_77
24.3
MONOCYTES_78
24.3
MONOCYTES_79
24.3
MONOCYTES_80
24.1
MONOCYTES_81
24.0
MONOCYTES_82
23.9
MONOCYTES_83
23.9
MONOCYTES_84
23.6
MONOCYTES_85
23.3
MONOCYTES_86
23.2
MONOCYTES_87
23.1
MONOCYTES_88
23.0
MONOCYTES_89
22.3
MONOCYTES_90
21.1
MONOCYTES_91
20.4
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Non-classical monocyte TPM: 42.6
Samples: 90
Max TPM: 64.8
Min TPM: 30.0
M2_1
64.8
M2_2
60.7
M2_3
59.8
M2_4
59.5
M2_5
56.4
M2_6
55.9
M2_7
55.6
M2_8
52.5
M2_9
52.3
M2_10
52.0
M2_11
51.2
M2_12
51.1
M2_13
50.6
M2_14
50.2
M2_15
49.7
M2_16
49.5
M2_17
49.0
M2_18
48.6
M2_19
48.4
M2_20
48.1
M2_21
47.5
M2_22
46.3
M2_23
46.2
M2_24
46.1
M2_25
45.9
M2_26
45.7
M2_27
45.6
M2_28
45.5
M2_29
45.4
M2_30
45.3
M2_31
44.6
M2_32
44.2
M2_33
44.1
M2_34
44.0
M2_35
43.4
M2_36
43.3
M2_37
43.2
M2_38
43.0
M2_39
42.7
M2_40
42.5
M2_41
42.3
M2_42
42.3
M2_43
41.9
M2_44
41.8
M2_45
41.5
M2_46
41.2
M2_47
41.2
M2_48
41.0
M2_49
40.9
M2_50
40.4
M2_51
40.4
M2_52
40.3
M2_53
40.3
M2_54
40.2
M2_55
39.8
M2_56
39.8
M2_57
39.8
M2_58
39.7
M2_59
39.7
M2_60
39.3
M2_61
39.1
M2_62
38.9
M2_63
38.6
M2_64
38.4
M2_65
38.1
M2_66
38.0
M2_67
37.9
M2_68
37.3
M2_69
37.1
M2_70
36.4
M2_71
36.2
M2_72
36.2
M2_73
35.5
M2_74
35.4
M2_75
35.3
M2_76
34.8
M2_77
34.5
M2_78
34.5
M2_79
34.4
M2_80
34.4
M2_81
34.3
M2_82
33.9
M2_83
33.9
M2_84
33.7
M2_85
33.2
M2_86
32.7
M2_87
32.1
M2_88
31.6
M2_89
31.1
M2_90
30.0
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