On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
42.2
nTPM
HPA Brain:
167.6
nTPM
GTEx:
42.2
nTPM
FANTOM5:
142.4
Scaled Tags Per Million
Macaque:
126.6
nTPM
Mouse:
53.7
nTPM
Rat:
52.5
nTPM
Pig:
104.4
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - Annotated protein expression
Pending normal tissue analysis
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
ND
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
ND
Spinal cord_03
ND
Spinal cord_04
ND
Spinal cord_05
ND
Spinal cord_06
ND
Spinal cord_07
ND
Spinal cord_08
ND
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
167.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 151.4
2734
Male, age 80, both hemispheres
197.7
2818
Female, age 79, both hemispheres
145.7
2193
Male, age 75, both hemispheres
136.8
2819
Male, age 47, both hemispheres
125.3
Cervical spinal cord, central gray nTPM: 96.0
2194
Female, age 79, both hemispheres
115.1
2816
Male, age 47, midline
114.0
1981
Female, age 72, midline
95.3
2048
Male, age 55, midline
92.0
2565
Male, age 75, midline
63.5
Cervical spinal cord, dorsal horn nTPM: 106.8
2296
Male, age 66, both hemispheres
202.3
2173
Female, age 72, unknown
140.2
2069
Male, age 47, both hemispheres
100.1
1877
Male, age 55, unknown
89.8
2721
Male, age 90, both hemispheres
56.2
2297
Male, age 75, both hemispheres
52.3
Cervical spinal cord, ventral horn nTPM: 110.7
2068
Male, age 55, unknown
148.2
2820
Female, age 79, both hemispheres
145.3
2098
Female, age 72, unknown
98.1
2480
Male, age 75, both hemispheres
95.6
2809
Male, age 90, both hemispheres
93.9
2295
Male, age 66, both hemispheres
82.9
Dorsal funiculus (white matter) nTPM: 167.6
2810
Male, age 90, both hemispheres
219.4
2128
Male, age 75, both hemispheres
160.5
2812
Male, age 66, both hemispheres
159.6
2817
Male, age 47, both hemispheres
155.0
2064
Female, age 79, both hemispheres
143.7
Lateral funiculus (white matter) nTPM: 144.5
2099
Male, age 90, both hemispheres
203.3
2094
Female, age 79, both hemispheres
146.0
2192
Male, age 75, both hemispheres
140.6
2294
Male, age 66, both hemispheres
88.2
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
42.2
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 42.2
Samples: 204
Max nTPM: 142.9
Min nTPM: 4.2
Std nTPM: 25.2
Median nTPM: 38.9
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
142.9
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
120.6
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
116.9
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
111.8
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
110.3
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
110.1
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
98.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
96.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
96.1
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
93.7
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
92.6
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
91.7
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
88.2
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
86.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
81.1
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
79.6
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
79.3
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
78.2
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
77.9
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
76.3
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
76.3
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
74.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
74.1
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
73.7
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
73.4
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
72.6
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
71.0
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
70.9
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
68.3
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
68.1
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
67.4
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
66.4
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
65.3
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
65.2
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
63.0
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
62.6
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
62.1
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
62.1
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
61.4
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
60.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
60.0
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
59.5
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
58.9
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
58.6
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
57.0
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
56.4
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
56.1
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
56.1
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
56.0
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
55.7
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
54.7
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
54.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
54.3
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
53.9
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
53.2
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
53.2
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
52.8
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
52.2
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
50.8
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
50.6
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
50.2
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
50.0
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
49.9
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
49.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
49.7
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
48.5
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
48.4
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
48.2
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
48.1
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
46.9
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
46.2
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
45.9
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
45.9
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
45.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
45.6
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
45.3
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
45.2
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
45.1
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
44.9
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
44.8
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
44.7
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
44.2
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
44.1
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
43.7
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
43.4
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
43.3
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
43.3
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
43.2
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
42.9
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
42.4
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
42.3
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
42.3
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
41.9
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
41.0
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
40.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
40.5
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
40.2
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
40.1
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
39.9
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
39.3
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
39.1
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
39.1
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
38.8
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
38.6
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
38.4
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
38.0
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
37.8
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
37.5
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
37.3
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
37.0
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
36.8
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
36.7
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
35.6
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
35.1
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
35.0
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
34.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
34.7
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
34.6
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
34.5
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
34.1
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
34.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
34.1
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
34.1
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
33.8
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
33.6
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
33.6
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
32.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
32.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
32.1
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
31.4
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
31.0
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
31.0
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
30.7
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
29.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
29.4
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
28.6
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
28.4
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
28.3
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
28.0
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
27.7
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
27.5
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
27.3
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
27.2
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
26.8
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
26.6
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
26.3
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
26.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
26.1
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
25.5
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
25.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
25.2
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
24.8
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
24.7
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
24.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
23.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
22.8
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
22.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
21.8
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
21.6
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
21.4
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
21.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
20.5
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
20.3
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
20.3
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
20.0
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
19.5
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
19.5
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
19.1
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
18.0
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
18.0
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
17.8
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
17.2
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
16.1
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
15.5
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
15.1
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
14.5
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
14.5
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
13.0
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
13.0
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
12.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
12.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
12.5
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
12.3
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
12.2
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
12.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
11.6
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
11.5
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
11.5
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
11.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
11.4
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
11.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
11.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
11.1
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
10.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
10.5
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
10.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
8.1
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
8.1
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
7.1
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
6.4
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
6.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
6.1
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
4.2
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
4.2
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
126.6
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 110.7
Samples: 2
Max nTPM: 126.1
Min nTPM: 95.3
Sample A
95.3
Sample B
126.1
Ventral spinal cord nTPM: 126.6
Samples: 1
Max nTPM: 126.6
Min nTPM: 126.6
Sample A
126.6
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104.4
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 89.1
Samples: 4
Max nTPM: 111.6
Min nTPM: 51.0
Sample A
Female
104.9
Sample B
Female
88.9
Sample C
Male
51.0
Sample D
Male
111.6
Ventral spinal cord nTPM: 104.4
Samples: 4
Max nTPM: 116.0
Min nTPM: 93.7
Sample A
Female
116.0
Sample B
Female
96.5
Sample C
Male
93.7
Sample D
Male
111.5
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
53.7
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 53.7
Samples: 4
Max nTPM: 55.6
Min nTPM: 50.6
Sample A
50.6
Sample B
55.6
Sample C
54.4
Sample D
54.3
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.5
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 52.5
Samples: 4
Max nTPM: 60.1
Min nTPM: 39.4
Sample A
58.0
Sample A
60.1
Sample A
52.4
Sample A
39.4
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The Human Protein Atlas project is funded
