MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.0 nTPM
HPA Brain:29.1 nTPM
GTEx:21.0 nTPM
FANTOM5:66.5 Scaled Tags Per Million
Pig:28.8 nTPM
Mouse:94.1 nTPM
Allen mouse:5.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 29.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.0
2019 Male, age 18, unknown 27.8
1827 Male, age 72, unknown 26.9
2411 Female, age 72, unknown 24.0
1870 Female, age 42, unknown 23.7
2666 Male, age 74, left hemisphere 22.1
2586 Male, age 75, left hemisphere 22.0
1833 Male, age 53, unknown 21.3
1830 Male, age 51, unknown 21.2
2219 Male, age 76, both hemispheres 20.6
2828 Female, age 72, unknown 20.2
Dorsal raphe nucleus
nTPM: 24.6
2298 Female, age 72, unknown 27.1
1828 Male, age 53, unknown 25.3
2047 Male, age 72, unknown 24.2
2750 Male, age 76, both hemispheres 23.3
2016 Female, age 72, unknown 23.0
Inferior colliculus
nTPM: 25.3
2097 Female, age 72, unknown 27.6
1848 Female, age 42, unknown 25.5
2849 Male, age 72, unknown 25.1
1890 Male, age 53, unknown 23.1
Median raphe nucleus
nTPM: 23.3
2220 Male, age 76, midline 23.3
Periaquaductal grey, anterior
nTPM: 26.4
1947 Male, age 18, unknown 30.6
1795 Male, age 51, unknown 24.8
2502 Female, age 75, unknown 23.8
Periaquaductal grey, dorsal
nTPM: 24.4
1840 Male, age 53, unknown 28.2
2850 Male, age 76, both hemispheres 24.9
1831 Male, age 72, unknown 22.5
2464 Female, age 72, unknown 22.0
Periaquaductal grey, lateral
nTPM: 23.3
2272 Male, age 74, both hemispheres 29.9
2140 Male, age 76, both hemispheres 20.5
2053 Male, age 18, unknown 19.6
Pretectal area
nTPM: 29.1
2007 Male, age 72, unknown 35.5
1817 Female, age 42, unknown 34.6
1816 Male, age 51, unknown 32.1
1944 Female, age 72, unknown 32.0
1815 Male, age 53, unknown 30.0
2273 Male, age 74, both hemispheres 29.4
2224 Female, age 72, unknown 28.4
2667 Female, age 75, unknown 26.2
2407 Male, age 75, both hemispheres 26.1
2825 Male, age 18, unknown 23.2
2316 Male, age 76, right hemisphere 22.1
Red nucleus
nTPM: 21.5
1821 Female, age 72, unknown 25.6
2785 Male, age 18, unknown 25.6
2725 Female, age 75, unknown 23.7
1865 Male, age 51, unknown 22.8
2588 Male, age 74, left hemisphere 21.9
2503 Female, age 72, unknown 21.4
2584 Male, age 75, left hemisphere 21.1
1954 Female, age 42, unknown 20.4
2769 Male, age 72, unknown 20.1
1904 Male, age 53, unknown 19.2
2823 Male, age 76, right hemisphere 18.7
2227 Male, age 72, unknown 17.5
Substantia nigra
nTPM: 25.5
2409 Female, age 72, unknown 30.6
1889 Female, age 72, unknown 29.6
1916 Female, age 42, unknown 27.1
1941 Male, age 53, unknown 26.9
2241 Male, age 72, unknown 26.7
2590 Female, age 75, unknown 25.0
2665 Male, age 74, both hemispheres 24.2
1851 Male, age 51, unknown 23.9
2583 Male, age 75, right hemisphere 21.3
2699 Male, age 18, unknown 19.3
Superior colliculus
nTPM: 24.5
2261 Male, age 18, unknown 27.3
2668 Female, age 75, unknown 26.9
2087 Female, age 72, unknown 26.7
1895 Male, age 76, right hemisphere 26.3
1796 Male, age 53, unknown 25.1
1839 Male, age 51, unknown 24.8
2664 Male, age 75, both hemispheres 23.1
2587 Male, age 74, left hemisphere 22.7
1995 Male, age 72, unknown 22.6
1913 Female, age 42, unknown 20.0
Ventral tegmental area
nTPM: 21.9
1915 Female, age 42, unknown 23.8
2218 Male, age 76, both hemispheres 22.1
2410 Female, age 72, unknown 22.1
1942 Male, age 51, unknown 21.7
2021 Male, age 53, unknown 20.9
2223 Female, age 72, unknown 20.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.0
Samples: 183

Max nTPM: 34.4
Min nTPM: 14.5
Std nTPM: 3.0
Median nTPM: 20.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 34.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 30.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 30.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 29.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 28.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 28.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 27.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 27.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 26.7
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 26.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.5
FF:10158-103A5 76 years, female 66.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.0
Samples: 4

Max nTPM: 28.0
Min nTPM: 20.8
Sample A Female 28.0
Sample B Female 22.8
Sample C Male 24.4
Sample D Male 20.8
Midbrain
nTPM: 27.5
Samples: 4

Max nTPM: 31.9
Min nTPM: 24.8
Sample A Female 24.8
Sample B Female 25.5
Sample C Male 31.9
Sample D Male 27.9
Periaqueductal gray
nTPM: 25.6
Samples: 3

Max nTPM: 27.5
Min nTPM: 24.4
Sample B Female 24.4
Sample C Male 27.5
Sample D Male 25.0
Superior colliculi
nTPM: 28.8
Samples: 4

Max nTPM: 32.5
Min nTPM: 26.1
Sample A Female 29.6
Sample B Female 26.8
Sample C Male 32.5
Sample D Male 26.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 94.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.1
Samples: 4

Max nTPM: 99.9
Min nTPM: 88.4
Sample A Male 88.4
Sample B Male 97.3
Sample C Female 99.9
Sample D Female 90.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
68545132 Antisense, RP_050118_03_A01, Mouse strain C57BL/6J (56 days, male) 5.6

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