A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
36.0
nTPM
Monaco:
207.7
nTPM
Schmiedel:
205.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.0
HPA sample
nTPM
Memory B-cell nTPM: 35.9
Samples: 6
Max nTPM: 50.9
Min nTPM: 6.9
P10809_1017
50.9
P10809_1025
50.4
P10809_1044
6.9
P10809_1063
37.5
P10809_1092
34.2
P10809_1105
35.5
Naive B-cell nTPM: 36.0
Samples: 6
Max nTPM: 40.9
Min nTPM: 24.7
P10809_1011
40.9
P10809_1029
36.0
P10809_1048
40.8
P10809_1067
24.7
P10809_1091
35.8
P10809_1104
37.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
207.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 148.2
Samples: 4
Max nTPM: 171.7
Min nTPM: 129.9
RHH5310_R3677
155.6
RHH5218_R3590
171.7
RHH5247_R3619
129.9
RHH5276_R3648
135.5
Naive B-cell nTPM: 200.6
Samples: 4
Max nTPM: 256.2
Min nTPM: 171.3
RHH5308_R3675
186.4
RHH5216_R3588
188.3
RHH5245_R3617
256.2
RHH5274_R3646
171.3
Non-switched memory B-cell nTPM: 207.7
Samples: 4
Max nTPM: 230.1
Min nTPM: 175.0
RHH5309_R3676
212.3
RHH5217_R3589
213.3
RHH5246_R3618
175.0
RHH5275_R3647
230.1
Plasmablast nTPM: 176.6
Samples: 4
Max nTPM: 207.9
Min nTPM: 158.5
RHH5312_R3679
207.9
RHH5220_R3592
176.6
RHH5249_R3621
158.5
RHH5278_R3650
163.5
Switched memory B-cell nTPM: 170.5
Samples: 4
Max nTPM: 189.6
Min nTPM: 147.0
RHH5311_R3678
189.6
RHH5219_R3591
147.0
RHH5248_R3620
169.2
RHH5277_R3649
176.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
205.8
Schmiedel sample id
TPM
Naive B-cell TPM: 205.8
Samples: 91
Max TPM: 263.3
Min TPM: 158.2
B_CELL_NAIVE_1
263.3
B_CELL_NAIVE_2
255.3
B_CELL_NAIVE_3
255.1
B_CELL_NAIVE_4
252.1
B_CELL_NAIVE_5
246.0
B_CELL_NAIVE_6
243.9
B_CELL_NAIVE_7
242.0
B_CELL_NAIVE_8
241.3
B_CELL_NAIVE_9
234.6
B_CELL_NAIVE_10
234.4
B_CELL_NAIVE_11
234.2
B_CELL_NAIVE_12
230.5
B_CELL_NAIVE_13
230.3
B_CELL_NAIVE_14
229.7
B_CELL_NAIVE_15
228.4
B_CELL_NAIVE_16
228.0
B_CELL_NAIVE_17
228.0
B_CELL_NAIVE_18
227.5
B_CELL_NAIVE_19
227.4
B_CELL_NAIVE_20
227.1
B_CELL_NAIVE_21
226.3
B_CELL_NAIVE_22
226.0
B_CELL_NAIVE_23
223.5
B_CELL_NAIVE_24
222.0
B_CELL_NAIVE_25
221.8
B_CELL_NAIVE_26
221.0
B_CELL_NAIVE_27
219.8
B_CELL_NAIVE_28
219.8
B_CELL_NAIVE_29
219.1
B_CELL_NAIVE_30
217.3
B_CELL_NAIVE_31
216.6
B_CELL_NAIVE_32
214.7
B_CELL_NAIVE_33
214.5
B_CELL_NAIVE_34
213.5
B_CELL_NAIVE_35
211.8
B_CELL_NAIVE_36
210.8
B_CELL_NAIVE_37
210.4
B_CELL_NAIVE_38
210.2
B_CELL_NAIVE_39
210.1
B_CELL_NAIVE_40
210.0
B_CELL_NAIVE_41
209.3
B_CELL_NAIVE_42
209.3
B_CELL_NAIVE_43
206.7
B_CELL_NAIVE_44
205.6
B_CELL_NAIVE_45
205.1
B_CELL_NAIVE_46
204.9
B_CELL_NAIVE_47
204.6
B_CELL_NAIVE_48
200.2
B_CELL_NAIVE_49
199.3
B_CELL_NAIVE_50
198.0
B_CELL_NAIVE_51
198.0
B_CELL_NAIVE_52
197.8
B_CELL_NAIVE_53
197.6
B_CELL_NAIVE_54
197.4
B_CELL_NAIVE_55
197.4
B_CELL_NAIVE_56
197.0
B_CELL_NAIVE_57
197.0
B_CELL_NAIVE_58
196.7
B_CELL_NAIVE_59
196.5
B_CELL_NAIVE_60
196.1
B_CELL_NAIVE_61
196.0
B_CELL_NAIVE_62
194.9
B_CELL_NAIVE_63
193.9
B_CELL_NAIVE_64
193.6
B_CELL_NAIVE_65
192.2
B_CELL_NAIVE_66
191.7
B_CELL_NAIVE_67
190.2
B_CELL_NAIVE_68
190.2
B_CELL_NAIVE_69
187.2
B_CELL_NAIVE_70
185.9
B_CELL_NAIVE_71
185.1
B_CELL_NAIVE_72
184.8
B_CELL_NAIVE_73
183.7
B_CELL_NAIVE_74
183.7
B_CELL_NAIVE_75
183.5
B_CELL_NAIVE_76
183.2
B_CELL_NAIVE_77
182.3
B_CELL_NAIVE_78
181.8
B_CELL_NAIVE_79
181.1
B_CELL_NAIVE_80
180.8
B_CELL_NAIVE_81
179.9
B_CELL_NAIVE_82
178.0
B_CELL_NAIVE_83
174.4
B_CELL_NAIVE_84
173.7
B_CELL_NAIVE_85
172.2
B_CELL_NAIVE_86
171.0
B_CELL_NAIVE_87
169.3
B_CELL_NAIVE_88
168.9
B_CELL_NAIVE_89
164.6
B_CELL_NAIVE_90
163.1
B_CELL_NAIVE_91
158.2
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