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BETA
  • SUMMARY

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  • BRAIN

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  • CYFIP2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:36.0 nTPM
Monaco:207.7 nTPM
Schmiedel:205.8 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

36.0
HPA sample nTPM
Memory B-cell
nTPM: 35.9
Samples: 6

Max nTPM: 50.9
Min nTPM: 6.9
P10809_1017 50.9
P10809_1025 50.4
P10809_1044 6.9
P10809_1063 37.5
P10809_1092 34.2
P10809_1105 35.5
Naive B-cell
nTPM: 36.0
Samples: 6

Max nTPM: 40.9
Min nTPM: 24.7
P10809_1011 40.9
P10809_1029 36.0
P10809_1048 40.8
P10809_1067 24.7
P10809_1091 35.8
P10809_1104 37.7

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

207.7
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 148.2
Samples: 4

Max nTPM: 171.7
Min nTPM: 129.9
RHH5310_R3677 155.6
RHH5218_R3590 171.7
RHH5247_R3619 129.9
RHH5276_R3648 135.5
Naive B-cell
nTPM: 200.6
Samples: 4

Max nTPM: 256.2
Min nTPM: 171.3
RHH5308_R3675 186.4
RHH5216_R3588 188.3
RHH5245_R3617 256.2
RHH5274_R3646 171.3
Non-switched memory B-cell
nTPM: 207.7
Samples: 4

Max nTPM: 230.1
Min nTPM: 175.0
RHH5309_R3676 212.3
RHH5217_R3589 213.3
RHH5246_R3618 175.0
RHH5275_R3647 230.1
Plasmablast
nTPM: 176.6
Samples: 4

Max nTPM: 207.9
Min nTPM: 158.5
RHH5312_R3679 207.9
RHH5220_R3592 176.6
RHH5249_R3621 158.5
RHH5278_R3650 163.5
Switched memory B-cell
nTPM: 170.5
Samples: 4

Max nTPM: 189.6
Min nTPM: 147.0
RHH5311_R3678 189.6
RHH5219_R3591 147.0
RHH5248_R3620 169.2
RHH5277_R3649 176.3

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

205.8
Schmiedel sample id TPM
Naive B-cell
TPM: 205.8
Samples: 91

Max TPM: 263.3
Min TPM: 158.2
B_CELL_NAIVE_1 263.3
B_CELL_NAIVE_2 255.3
B_CELL_NAIVE_3 255.1
B_CELL_NAIVE_4 252.1
B_CELL_NAIVE_5 246.0
B_CELL_NAIVE_6 243.9
B_CELL_NAIVE_7 242.0
B_CELL_NAIVE_8 241.3
B_CELL_NAIVE_9 234.6
B_CELL_NAIVE_10 234.4
B_CELL_NAIVE_11 234.2
B_CELL_NAIVE_12 230.5
B_CELL_NAIVE_13 230.3
B_CELL_NAIVE_14 229.7
B_CELL_NAIVE_15 228.4
B_CELL_NAIVE_16 228.0
B_CELL_NAIVE_17 228.0
B_CELL_NAIVE_18 227.5
B_CELL_NAIVE_19 227.4
B_CELL_NAIVE_20 227.1
B_CELL_NAIVE_21 226.3
B_CELL_NAIVE_22 226.0
B_CELL_NAIVE_23 223.5
B_CELL_NAIVE_24 222.0
B_CELL_NAIVE_25 221.8
B_CELL_NAIVE_26 221.0
B_CELL_NAIVE_27 219.8
B_CELL_NAIVE_28 219.8
B_CELL_NAIVE_29 219.1
B_CELL_NAIVE_30 217.3
B_CELL_NAIVE_31 216.6
B_CELL_NAIVE_32 214.7
B_CELL_NAIVE_33 214.5
B_CELL_NAIVE_34 213.5
B_CELL_NAIVE_35 211.8
B_CELL_NAIVE_36 210.8
B_CELL_NAIVE_37 210.4
B_CELL_NAIVE_38 210.2
B_CELL_NAIVE_39 210.1
B_CELL_NAIVE_40 210.0
B_CELL_NAIVE_41 209.3
B_CELL_NAIVE_42 209.3
B_CELL_NAIVE_43 206.7
B_CELL_NAIVE_44 205.6
B_CELL_NAIVE_45 205.1
B_CELL_NAIVE_46 204.9
B_CELL_NAIVE_47 204.6
B_CELL_NAIVE_48 200.2
B_CELL_NAIVE_49 199.3
B_CELL_NAIVE_50 198.0
B_CELL_NAIVE_51 198.0
B_CELL_NAIVE_52 197.8
B_CELL_NAIVE_53 197.6
B_CELL_NAIVE_54 197.4
B_CELL_NAIVE_55 197.4
B_CELL_NAIVE_56 197.0
B_CELL_NAIVE_57 197.0
B_CELL_NAIVE_58 196.7
B_CELL_NAIVE_59 196.5
B_CELL_NAIVE_60 196.1
B_CELL_NAIVE_61 196.0
B_CELL_NAIVE_62 194.9
B_CELL_NAIVE_63 193.9
B_CELL_NAIVE_64 193.6
B_CELL_NAIVE_65 192.2
B_CELL_NAIVE_66 191.7
B_CELL_NAIVE_67 190.2
B_CELL_NAIVE_68 190.2
B_CELL_NAIVE_69 187.2
B_CELL_NAIVE_70 185.9
B_CELL_NAIVE_71 185.1
B_CELL_NAIVE_72 184.8
B_CELL_NAIVE_73 183.7
B_CELL_NAIVE_74 183.7
B_CELL_NAIVE_75 183.5
B_CELL_NAIVE_76 183.2
B_CELL_NAIVE_77 182.3
B_CELL_NAIVE_78 181.8
B_CELL_NAIVE_79 181.1
B_CELL_NAIVE_80 180.8
B_CELL_NAIVE_81 179.9
B_CELL_NAIVE_82 178.0
B_CELL_NAIVE_83 174.4
B_CELL_NAIVE_84 173.7
B_CELL_NAIVE_85 172.2
B_CELL_NAIVE_86 171.0
B_CELL_NAIVE_87 169.3
B_CELL_NAIVE_88 168.9
B_CELL_NAIVE_89 164.6
B_CELL_NAIVE_90 163.1
B_CELL_NAIVE_91 158.2
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