A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
53.9
nTPM
Monaco:
433.8
nTPM
Schmiedel:
349.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.9
HPA sample
nTPM
NK-cell nTPM: 53.9
Samples: 6
Max nTPM: 78.1
Min nTPM: 17.3
P10809_1013
48.8
P10809_1033
62.7
P10809_1052
62.5
P10809_1071
54.2
P10809_1093
17.3
P10809_1103
78.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
433.8
Monaco sample
nTPM
NK-cell nTPM: 433.8
Samples: 4
Max nTPM: 456.2
Min nTPM: 391.7
RHH5316_R3683
433.6
RHH5224_R3596
456.2
RHH5253_R3625
453.7
RHH5282_R3654
391.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
349.9
Schmiedel sample id
TPM
NK-cell TPM: 349.9
Samples: 90
Max TPM: 527.3
Min TPM: 239.0
NK_1
527.3
NK_2
483.0
NK_3
455.5
NK_4
447.2
NK_5
428.0
NK_6
420.8
NK_7
414.8
NK_8
411.8
NK_9
407.9
NK_10
407.2
NK_11
401.1
NK_12
400.1
NK_13
399.9
NK_14
398.4
NK_15
392.8
NK_16
391.8
NK_17
391.5
NK_18
389.1
NK_19
386.3
NK_20
384.3
NK_21
378.9
NK_22
378.7
NK_23
376.5
NK_24
375.7
NK_25
375.5
NK_26
373.3
NK_27
373.1
NK_28
372.9
NK_29
370.1
NK_30
366.6
NK_31
365.6
NK_32
365.4
NK_33
364.2
NK_34
359.9
NK_35
359.0
NK_36
358.6
NK_37
357.8
NK_38
356.7
NK_39
355.5
NK_40
352.8
NK_41
349.7
NK_42
349.3
NK_43
348.2
NK_44
346.6
NK_45
344.4
NK_46
343.3
NK_47
341.6
NK_48
340.7
NK_49
340.3
NK_50
338.8
NK_51
338.6
NK_52
337.1
NK_53
336.9
NK_54
335.6
NK_55
331.7
NK_56
331.3
NK_57
330.9
NK_58
330.0
NK_59
327.5
NK_60
326.5
NK_61
322.6
NK_62
321.5
NK_63
321.3
NK_64
318.5
NK_65
316.0
NK_66
314.7
NK_67
314.3
NK_68
314.1
NK_69
312.6
NK_70
312.1
NK_71
310.9
NK_72
310.8
NK_73
308.3
NK_74
307.9
NK_75
307.8
NK_76
302.7
NK_77
301.2
NK_78
301.0
NK_79
300.4
NK_80
299.6
NK_81
298.3
NK_82
298.3
NK_83
297.0
NK_84
292.5
NK_85
291.7
NK_86
289.1
NK_87
285.8
NK_88
270.6
NK_89
268.1
NK_90
239.0
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