A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.5
nTPM
Monaco:
63.9
nTPM
Schmiedel:
72.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.5
HPA sample
nTPM
Memory B-cell nTPM: 10.5
Samples: 6
Max nTPM: 46.2
Min nTPM: 1.4
P10809_1017
2.0
P10809_1025
1.4
P10809_1044
46.2
P10809_1063
5.6
P10809_1092
3.4
P10809_1105
4.3
Naive B-cell nTPM: 5.5
Samples: 6
Max nTPM: 10.3
Min nTPM: 2.1
P10809_1011
3.6
P10809_1029
6.1
P10809_1048
10.3
P10809_1067
5.3
P10809_1091
5.3
P10809_1104
2.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 55.8
Samples: 4
Max nTPM: 97.7
Min nTPM: 28.3
RHH5310_R3677
28.3
RHH5218_R3590
65.8
RHH5247_R3619
31.2
RHH5276_R3648
97.7
Naive B-cell nTPM: 63.9
Samples: 4
Max nTPM: 87.6
Min nTPM: 46.2
RHH5308_R3675
55.1
RHH5216_R3588
46.2
RHH5245_R3617
87.6
RHH5274_R3646
66.5
Non-switched memory B-cell nTPM: 56.2
Samples: 4
Max nTPM: 82.0
Min nTPM: 40.9
RHH5309_R3676
40.9
RHH5217_R3589
48.2
RHH5246_R3618
53.6
RHH5275_R3647
82.0
Plasmablast nTPM: 36.3
Samples: 4
Max nTPM: 44.9
Min nTPM: 23.3
RHH5312_R3679
37.2
RHH5220_R3592
23.3
RHH5249_R3621
39.9
RHH5278_R3650
44.9
Switched memory B-cell nTPM: 53.5
Samples: 4
Max nTPM: 84.8
Min nTPM: 27.2
RHH5311_R3678
27.2
RHH5219_R3591
45.6
RHH5248_R3620
56.2
RHH5277_R3649
84.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.0
Schmiedel sample id
TPM
Naive B-cell TPM: 72.0
Samples: 91
Max TPM: 90.7
Min TPM: 55.9
B_CELL_NAIVE_1
90.7
B_CELL_NAIVE_2
90.2
B_CELL_NAIVE_3
87.4
B_CELL_NAIVE_4
86.9
B_CELL_NAIVE_5
86.1
B_CELL_NAIVE_6
85.8
B_CELL_NAIVE_7
85.3
B_CELL_NAIVE_8
84.8
B_CELL_NAIVE_9
82.4
B_CELL_NAIVE_10
82.0
B_CELL_NAIVE_11
81.4
B_CELL_NAIVE_12
81.3
B_CELL_NAIVE_13
81.0
B_CELL_NAIVE_14
80.5
B_CELL_NAIVE_15
80.2
B_CELL_NAIVE_16
79.6
B_CELL_NAIVE_17
79.1
B_CELL_NAIVE_18
79.0
B_CELL_NAIVE_19
78.6
B_CELL_NAIVE_20
78.1
B_CELL_NAIVE_21
77.5
B_CELL_NAIVE_22
77.5
B_CELL_NAIVE_23
77.4
B_CELL_NAIVE_24
77.4
B_CELL_NAIVE_25
77.3
B_CELL_NAIVE_26
75.9
B_CELL_NAIVE_27
75.6
B_CELL_NAIVE_28
75.5
B_CELL_NAIVE_29
75.3
B_CELL_NAIVE_30
75.1
B_CELL_NAIVE_31
74.9
B_CELL_NAIVE_32
74.4
B_CELL_NAIVE_33
74.2
B_CELL_NAIVE_34
74.1
B_CELL_NAIVE_35
74.0
B_CELL_NAIVE_36
73.9
B_CELL_NAIVE_37
73.9
B_CELL_NAIVE_38
73.5
B_CELL_NAIVE_39
73.4
B_CELL_NAIVE_40
72.6
B_CELL_NAIVE_41
72.5
B_CELL_NAIVE_42
72.3
B_CELL_NAIVE_43
72.2
B_CELL_NAIVE_44
72.1
B_CELL_NAIVE_45
71.9
B_CELL_NAIVE_46
71.7
B_CELL_NAIVE_47
71.6
B_CELL_NAIVE_48
71.0
B_CELL_NAIVE_49
70.8
B_CELL_NAIVE_50
70.8
B_CELL_NAIVE_51
70.7
B_CELL_NAIVE_52
70.6
B_CELL_NAIVE_53
70.6
B_CELL_NAIVE_54
70.5
B_CELL_NAIVE_55
70.3
B_CELL_NAIVE_56
70.0
B_CELL_NAIVE_57
69.9
B_CELL_NAIVE_58
69.8
B_CELL_NAIVE_59
69.6
B_CELL_NAIVE_60
69.2
B_CELL_NAIVE_61
69.2
B_CELL_NAIVE_62
69.1
B_CELL_NAIVE_63
68.9
B_CELL_NAIVE_64
68.8
B_CELL_NAIVE_65
68.6
B_CELL_NAIVE_66
68.4
B_CELL_NAIVE_67
67.7
B_CELL_NAIVE_68
67.5
B_CELL_NAIVE_69
67.0
B_CELL_NAIVE_70
66.0
B_CELL_NAIVE_71
65.8
B_CELL_NAIVE_72
65.6
B_CELL_NAIVE_73
65.5
B_CELL_NAIVE_74
65.2
B_CELL_NAIVE_75
64.8
B_CELL_NAIVE_76
64.3
B_CELL_NAIVE_77
64.0
B_CELL_NAIVE_78
64.0
B_CELL_NAIVE_79
63.8
B_CELL_NAIVE_80
61.3
B_CELL_NAIVE_81
61.1
B_CELL_NAIVE_82
60.9
B_CELL_NAIVE_83
60.7
B_CELL_NAIVE_84
59.8
B_CELL_NAIVE_85
59.6
B_CELL_NAIVE_86
59.6
B_CELL_NAIVE_87
58.0
B_CELL_NAIVE_88
57.6
B_CELL_NAIVE_89
57.4
B_CELL_NAIVE_90
57.2
B_CELL_NAIVE_91
55.9
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
