A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.4
nTPM
Monaco:
87.6
nTPM
Schmiedel:
90.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.4
HPA sample
nTPM
Classical monocyte nTPM: 6.8
Samples: 6
Max nTPM: 11.7
Min nTPM: 3.2
P10809_1003
3.2
P10809_1020
4.6
P10809_1039
8.1
P10809_1058
11.7
P10809_1080
6.3
P10809_1107
7.0
Intermediate monocyte nTPM: 8.1
Samples: 6
Max nTPM: 15.2
Min nTPM: 4.3
P10809_1004
5.5
P10809_1023
8.1
P10809_1042
4.3
P10809_1061
15.2
P10809_1081
7.3
P10809_1108
8.3
Non-classical monocyte nTPM: 18.4
Samples: 5
Max nTPM: 22.3
Min nTPM: 14.6
P10809_1005
14.6
P10809_1053
18.1
P10809_1072
21.1
P10809_1082
16.0
P10809_1109
22.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.6
Monaco sample
nTPM
Classical monocyte nTPM: 64.1
Samples: 4
Max nTPM: 71.6
Min nTPM: 55.8
RHH5313_R3680
71.6
RHH5221_R3593
55.8
RHH5250_R3622
68.9
RHH5279_R3651
60.1
Intermediate monocyte nTPM: 65.8
Samples: 4
Max nTPM: 87.6
Min nTPM: 44.2
RHH5314_R3681
62.9
RHH5222_R3594
44.2
RHH5251_R3623
87.6
RHH5280_R3652
68.6
Non-classical monocyte nTPM: 87.6
Samples: 4
Max nTPM: 106.5
Min nTPM: 74.5
RHH5315_R3682
78.3
RHH5223_R3595
74.5
RHH5252_R3624
106.5
RHH5281_R3653
91.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.9
Schmiedel sample id
TPM
Classical monocyte TPM: 55.1
Samples: 91
Max TPM: 72.0
Min TPM: 40.6
MONOCYTES_1
72.0
MONOCYTES_2
68.4
MONOCYTES_3
67.8
MONOCYTES_4
67.5
MONOCYTES_5
66.9
MONOCYTES_6
66.3
MONOCYTES_7
65.7
MONOCYTES_8
65.3
MONOCYTES_9
64.5
MONOCYTES_10
64.5
MONOCYTES_11
64.4
MONOCYTES_12
64.4
MONOCYTES_13
63.7
MONOCYTES_14
63.5
MONOCYTES_15
62.8
MONOCYTES_16
62.8
MONOCYTES_17
62.2
MONOCYTES_18
61.9
MONOCYTES_19
61.5
MONOCYTES_20
61.4
MONOCYTES_21
61.3
MONOCYTES_22
60.5
MONOCYTES_23
60.4
MONOCYTES_24
59.9
MONOCYTES_25
59.7
MONOCYTES_26
59.5
MONOCYTES_27
59.1
MONOCYTES_28
58.6
MONOCYTES_29
58.3
MONOCYTES_30
58.1
MONOCYTES_31
57.9
MONOCYTES_32
57.8
MONOCYTES_33
57.4
MONOCYTES_34
57.4
MONOCYTES_35
57.2
MONOCYTES_36
57.1
MONOCYTES_37
57.0
MONOCYTES_38
56.4
MONOCYTES_39
56.1
MONOCYTES_40
56.0
MONOCYTES_41
55.8
MONOCYTES_42
55.8
MONOCYTES_43
55.8
MONOCYTES_44
55.7
MONOCYTES_45
55.2
MONOCYTES_46
54.9
MONOCYTES_47
54.9
MONOCYTES_48
54.4
MONOCYTES_49
54.4
MONOCYTES_50
54.4
MONOCYTES_51
54.3
MONOCYTES_52
54.2
MONOCYTES_53
54.1
MONOCYTES_54
53.5
MONOCYTES_55
53.2
MONOCYTES_56
52.7
MONOCYTES_57
52.5
MONOCYTES_58
52.4
MONOCYTES_59
52.0
MONOCYTES_60
51.9
MONOCYTES_61
51.2
MONOCYTES_62
50.8
MONOCYTES_63
50.6
MONOCYTES_64
50.6
MONOCYTES_65
50.5
MONOCYTES_66
50.0
MONOCYTES_67
49.9
MONOCYTES_68
49.4
MONOCYTES_69
49.1
MONOCYTES_70
49.0
MONOCYTES_71
48.9
MONOCYTES_72
48.7
MONOCYTES_73
48.7
MONOCYTES_74
48.7
MONOCYTES_75
48.3
MONOCYTES_76
48.2
MONOCYTES_77
47.5
MONOCYTES_78
47.5
MONOCYTES_79
47.0
MONOCYTES_80
47.0
MONOCYTES_81
46.8
MONOCYTES_82
46.6
MONOCYTES_83
46.2
MONOCYTES_84
45.7
MONOCYTES_85
45.3
MONOCYTES_86
45.2
MONOCYTES_87
44.3
MONOCYTES_88
43.0
MONOCYTES_89
42.8
MONOCYTES_90
41.0
MONOCYTES_91
40.6
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Non-classical monocyte TPM: 90.9
Samples: 90
Max TPM: 120.8
Min TPM: 49.0
M2_1
120.8
M2_2
119.1
M2_3
112.2
M2_4
110.5
M2_5
109.6
M2_6
109.1
M2_7
108.6
M2_8
107.2
M2_9
106.8
M2_10
106.5
M2_11
106.1
M2_12
105.9
M2_13
105.6
M2_14
104.8
M2_15
103.5
M2_16
103.5
M2_17
103.3
M2_18
102.9
M2_19
102.9
M2_20
101.7
M2_21
101.4
M2_22
100.9
M2_23
99.9
M2_24
99.9
M2_25
99.4
M2_26
98.7
M2_27
97.5
M2_28
97.0
M2_29
96.9
M2_30
96.1
M2_31
95.6
M2_32
95.1
M2_33
95.0
M2_34
94.9
M2_35
94.6
M2_36
93.0
M2_37
92.7
M2_38
92.6
M2_39
92.5
M2_40
92.4
M2_41
91.8
M2_42
91.5
M2_43
91.3
M2_44
91.1
M2_45
91.1
M2_46
90.8
M2_47
90.6
M2_48
90.0
M2_49
89.5
M2_50
89.5
M2_51
88.7
M2_52
87.7
M2_53
87.6
M2_54
87.5
M2_55
87.4
M2_56
86.5
M2_57
86.5
M2_58
86.2
M2_59
85.9
M2_60
85.8
M2_61
85.6
M2_62
85.5
M2_63
85.5
M2_64
85.0
M2_65
84.2
M2_66
84.1
M2_67
84.0
M2_68
83.7
M2_69
83.1
M2_70
82.8
M2_71
82.2
M2_72
82.0
M2_73
81.9
M2_74
81.3
M2_75
80.3
M2_76
78.8
M2_77
78.2
M2_78
77.2
M2_79
76.9
M2_80
76.9
M2_81
76.9
M2_82
76.0
M2_83
75.9
M2_84
75.4
M2_85
72.1
M2_86
68.1
M2_87
67.4
M2_88
65.2
M2_89
63.4
M2_90
49.0
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