A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.4
nTPM
Monaco:
61.8
nTPM
Schmiedel:
144.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.4
HPA sample
nTPM
Memory B-cell nTPM: 4.8
Samples: 6
Max nTPM: 7.0
Min nTPM: 2.2
P10809_1017
6.5
P10809_1025
7.0
P10809_1044
2.2
P10809_1063
3.2
P10809_1092
3.3
P10809_1105
6.7
Naive B-cell nTPM: 5.4
Samples: 6
Max nTPM: 9.5
Min nTPM: 3.1
P10809_1011
4.8
P10809_1029
3.1
P10809_1048
9.5
P10809_1067
5.6
P10809_1091
4.7
P10809_1104
4.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 57.2
Samples: 4
Max nTPM: 62.5
Min nTPM: 43.8
RHH5310_R3677
60.5
RHH5218_R3590
61.9
RHH5247_R3619
43.8
RHH5276_R3648
62.5
Naive B-cell nTPM: 61.8
Samples: 4
Max nTPM: 75.6
Min nTPM: 54.7
RHH5308_R3675
54.7
RHH5216_R3588
60.3
RHH5245_R3617
75.6
RHH5274_R3646
56.5
Non-switched memory B-cell nTPM: 61.4
Samples: 4
Max nTPM: 71.7
Min nTPM: 49.1
RHH5309_R3676
64.9
RHH5217_R3589
49.1
RHH5246_R3618
59.9
RHH5275_R3647
71.7
Plasmablast nTPM: 44.9
Samples: 4
Max nTPM: 59.6
Min nTPM: 33.3
RHH5312_R3679
59.6
RHH5220_R3592
33.3
RHH5249_R3621
35.9
RHH5278_R3650
50.6
Switched memory B-cell nTPM: 59.5
Samples: 4
Max nTPM: 67.0
Min nTPM: 53.0
RHH5311_R3678
67.0
RHH5219_R3591
53.0
RHH5248_R3620
62.9
RHH5277_R3649
54.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
144.3
Schmiedel sample id
TPM
Naive B-cell TPM: 144.3
Samples: 91
Max TPM: 242.6
Min TPM: 97.7
B_CELL_NAIVE_1
242.6
B_CELL_NAIVE_2
222.6
B_CELL_NAIVE_3
213.4
B_CELL_NAIVE_4
210.1
B_CELL_NAIVE_5
204.9
B_CELL_NAIVE_6
190.6
B_CELL_NAIVE_7
190.1
B_CELL_NAIVE_8
189.2
B_CELL_NAIVE_9
180.6
B_CELL_NAIVE_10
179.9
B_CELL_NAIVE_11
177.5
B_CELL_NAIVE_12
173.0
B_CELL_NAIVE_13
163.4
B_CELL_NAIVE_14
163.3
B_CELL_NAIVE_15
158.4
B_CELL_NAIVE_16
155.8
B_CELL_NAIVE_17
155.6
B_CELL_NAIVE_18
154.3
B_CELL_NAIVE_19
154.2
B_CELL_NAIVE_20
153.9
B_CELL_NAIVE_21
153.2
B_CELL_NAIVE_22
152.8
B_CELL_NAIVE_23
152.6
B_CELL_NAIVE_24
151.7
B_CELL_NAIVE_25
151.5
B_CELL_NAIVE_26
151.4
B_CELL_NAIVE_27
151.4
B_CELL_NAIVE_28
150.4
B_CELL_NAIVE_29
149.8
B_CELL_NAIVE_30
149.4
B_CELL_NAIVE_31
149.3
B_CELL_NAIVE_32
148.5
B_CELL_NAIVE_33
146.7
B_CELL_NAIVE_34
145.7
B_CELL_NAIVE_35
145.2
B_CELL_NAIVE_36
144.6
B_CELL_NAIVE_37
144.1
B_CELL_NAIVE_38
143.6
B_CELL_NAIVE_39
143.5
B_CELL_NAIVE_40
143.2
B_CELL_NAIVE_41
142.2
B_CELL_NAIVE_42
141.1
B_CELL_NAIVE_43
140.2
B_CELL_NAIVE_44
139.9
B_CELL_NAIVE_45
139.7
B_CELL_NAIVE_46
139.3
B_CELL_NAIVE_47
138.9
B_CELL_NAIVE_48
138.7
B_CELL_NAIVE_49
137.7
B_CELL_NAIVE_50
137.6
B_CELL_NAIVE_51
135.8
B_CELL_NAIVE_52
135.4
B_CELL_NAIVE_53
134.5
B_CELL_NAIVE_54
134.1
B_CELL_NAIVE_55
134.0
B_CELL_NAIVE_56
133.8
B_CELL_NAIVE_57
133.8
B_CELL_NAIVE_58
133.5
B_CELL_NAIVE_59
133.0
B_CELL_NAIVE_60
132.7
B_CELL_NAIVE_61
131.9
B_CELL_NAIVE_62
131.9
B_CELL_NAIVE_63
131.4
B_CELL_NAIVE_64
131.0
B_CELL_NAIVE_65
131.0
B_CELL_NAIVE_66
130.3
B_CELL_NAIVE_67
130.1
B_CELL_NAIVE_68
129.9
B_CELL_NAIVE_69
129.6
B_CELL_NAIVE_70
128.4
B_CELL_NAIVE_71
128.2
B_CELL_NAIVE_72
128.1
B_CELL_NAIVE_73
126.6
B_CELL_NAIVE_74
126.5
B_CELL_NAIVE_75
125.0
B_CELL_NAIVE_76
124.8
B_CELL_NAIVE_77
123.7
B_CELL_NAIVE_78
120.7
B_CELL_NAIVE_79
120.4
B_CELL_NAIVE_80
117.8
B_CELL_NAIVE_81
117.7
B_CELL_NAIVE_82
117.4
B_CELL_NAIVE_83
116.1
B_CELL_NAIVE_84
115.5
B_CELL_NAIVE_85
115.4
B_CELL_NAIVE_86
115.4
B_CELL_NAIVE_87
115.2
B_CELL_NAIVE_88
113.4
B_CELL_NAIVE_89
112.9
B_CELL_NAIVE_90
107.7
B_CELL_NAIVE_91
97.7
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