A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.6
nTPM
Monaco:
62.7
nTPM
Schmiedel:
107.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.6
HPA sample
nTPM
Classical monocyte nTPM: 4.1
Samples: 6
Max nTPM: 4.7
Min nTPM: 3.2
P10809_1003
4.3
P10809_1020
3.8
P10809_1039
4.7
P10809_1058
3.9
P10809_1080
4.6
P10809_1107
3.2
Intermediate monocyte nTPM: 5.2
Samples: 6
Max nTPM: 7.9
Min nTPM: 3.1
P10809_1004
5.6
P10809_1023
4.8
P10809_1042
5.7
P10809_1061
7.9
P10809_1081
4.1
P10809_1108
3.1
Non-classical monocyte nTPM: 7.6
Samples: 5
Max nTPM: 20.4
Min nTPM: 3.1
P10809_1005
5.1
P10809_1053
5.3
P10809_1072
20.4
P10809_1082
4.2
P10809_1109
3.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.7
Monaco sample
nTPM
Classical monocyte nTPM: 47.1
Samples: 4
Max nTPM: 55.2
Min nTPM: 40.6
RHH5313_R3680
46.8
RHH5221_R3593
55.2
RHH5250_R3622
40.6
RHH5279_R3651
45.7
Intermediate monocyte nTPM: 47.4
Samples: 4
Max nTPM: 51.4
Min nTPM: 42.6
RHH5314_R3681
49.3
RHH5222_R3594
46.3
RHH5251_R3623
51.4
RHH5280_R3652
42.6
Non-classical monocyte nTPM: 62.8
Samples: 4
Max nTPM: 91.0
Min nTPM: 49.6
RHH5315_R3682
49.6
RHH5223_R3595
91.0
RHH5252_R3624
49.6
RHH5281_R3653
60.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.0
Schmiedel sample id
TPM
Classical monocyte TPM: 65.6
Samples: 91
Max TPM: 87.1
Min TPM: 47.8
MONOCYTES_1
87.1
MONOCYTES_2
83.4
MONOCYTES_3
83.2
MONOCYTES_4
80.2
MONOCYTES_5
79.3
MONOCYTES_6
78.7
MONOCYTES_7
78.5
MONOCYTES_8
77.6
MONOCYTES_9
77.1
MONOCYTES_10
77.1
MONOCYTES_11
76.9
MONOCYTES_12
76.2
MONOCYTES_13
75.4
MONOCYTES_14
75.0
MONOCYTES_15
74.9
MONOCYTES_16
74.8
MONOCYTES_17
74.5
MONOCYTES_18
74.5
MONOCYTES_19
74.5
MONOCYTES_20
73.9
MONOCYTES_21
73.6
MONOCYTES_22
73.4
MONOCYTES_23
72.5
MONOCYTES_24
71.5
MONOCYTES_25
70.1
MONOCYTES_26
69.6
MONOCYTES_27
69.5
MONOCYTES_28
69.5
MONOCYTES_29
69.4
MONOCYTES_30
69.0
MONOCYTES_31
68.7
MONOCYTES_32
68.4
MONOCYTES_33
68.3
MONOCYTES_34
67.8
MONOCYTES_35
67.8
MONOCYTES_36
67.6
MONOCYTES_37
67.3
MONOCYTES_38
67.3
MONOCYTES_39
67.1
MONOCYTES_40
66.9
MONOCYTES_41
66.6
MONOCYTES_42
65.2
MONOCYTES_43
65.1
MONOCYTES_44
64.9
MONOCYTES_45
64.6
MONOCYTES_46
64.5
MONOCYTES_47
64.1
MONOCYTES_48
64.0
MONOCYTES_49
64.0
MONOCYTES_50
63.6
MONOCYTES_51
63.6
MONOCYTES_52
63.3
MONOCYTES_53
63.0
MONOCYTES_54
62.8
MONOCYTES_55
62.7
MONOCYTES_56
62.7
MONOCYTES_57
62.6
MONOCYTES_58
62.3
MONOCYTES_59
61.8
MONOCYTES_60
61.5
MONOCYTES_61
61.3
MONOCYTES_62
60.9
MONOCYTES_63
60.9
MONOCYTES_64
60.1
MONOCYTES_65
60.0
MONOCYTES_66
59.3
MONOCYTES_67
58.9
MONOCYTES_68
58.8
MONOCYTES_69
58.7
MONOCYTES_70
58.7
MONOCYTES_71
58.4
MONOCYTES_72
58.0
MONOCYTES_73
57.8
MONOCYTES_74
57.6
MONOCYTES_75
57.4
MONOCYTES_76
57.4
MONOCYTES_77
57.3
MONOCYTES_78
57.3
MONOCYTES_79
57.2
MONOCYTES_80
56.4
MONOCYTES_81
55.7
MONOCYTES_82
55.7
MONOCYTES_83
55.3
MONOCYTES_84
54.0
MONOCYTES_85
53.6
MONOCYTES_86
53.2
MONOCYTES_87
52.0
MONOCYTES_88
52.0
MONOCYTES_89
51.8
MONOCYTES_90
51.6
MONOCYTES_91
47.8
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Non-classical monocyte TPM: 107.0
Samples: 90
Max TPM: 159.7
Min TPM: 73.6
M2_1
159.7
M2_2
158.6
M2_3
148.0
M2_4
147.5
M2_5
146.5
M2_6
143.4
M2_7
141.1
M2_8
140.8
M2_9
137.5
M2_10
133.3
M2_11
132.8
M2_12
129.7
M2_13
128.2
M2_14
127.9
M2_15
127.6
M2_16
123.5
M2_17
122.3
M2_18
120.3
M2_19
119.9
M2_20
119.8
M2_21
117.3
M2_22
117.1
M2_23
115.9
M2_24
115.4
M2_25
115.2
M2_26
114.5
M2_27
113.0
M2_28
112.6
M2_29
112.5
M2_30
112.0
M2_31
111.4
M2_32
110.3
M2_33
110.1
M2_34
109.6
M2_35
109.5
M2_36
108.7
M2_37
108.5
M2_38
107.2
M2_39
106.4
M2_40
104.8
M2_41
104.3
M2_42
104.0
M2_43
103.2
M2_44
103.0
M2_45
102.8
M2_46
101.9
M2_47
101.8
M2_48
101.6
M2_49
101.5
M2_50
101.1
M2_51
101.1
M2_52
100.6
M2_53
100.3
M2_54
100.0
M2_55
98.5
M2_56
97.8
M2_57
97.7
M2_58
97.3
M2_59
97.0
M2_60
95.8
M2_61
95.8
M2_62
95.5
M2_63
95.4
M2_64
95.0
M2_65
94.6
M2_66
94.5
M2_67
94.1
M2_68
93.6
M2_69
93.4
M2_70
93.3
M2_71
92.3
M2_72
92.0
M2_73
91.5
M2_74
91.2
M2_75
91.1
M2_76
91.0
M2_77
90.9
M2_78
90.5
M2_79
89.5
M2_80
89.3
M2_81
86.3
M2_82
86.2
M2_83
85.8
M2_84
85.4
M2_85
85.3
M2_86
85.2
M2_87
84.9
M2_88
77.9
M2_89
75.3
M2_90
73.6
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