HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.2 nTPM
HPA Brain:34.9 nTPM
GTEx:61.2 nTPM
FANTOM5:74.3 Scaled Tags Per Million
Pig:46.3 nTPM
Mouse:38.0 nTPM
Allen mouse:2.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 34.9
Sample id Sample description nTPM
Hippocampus
nTPM: 34.9
2529 Female, age 94, left hemisphere 42.6
1898 Male, age 80, left hemisphere 34.5
1911 Female, age 85, right hemisphere 34.3
2621 Female, age 67, right hemisphere 34.1
1855 Male, age 76, left hemisphere 32.2
2148 Female, age 91, left hemisphere 31.6
Dentate gyrus
nTPM: 33.4
2530 Female, age 94, left hemisphere 41.4
2528 Male, age 74, both hemispheres 37.6
2010 Male, age 76, both hemispheres 33.6
2246 Female, age 85, both hemispheres 33.1
1927 Female, age 91, both hemispheres 27.7
2531 Female, age 67, both hemispheres 27.2
Entorhinal gyrus
nTPM: 32.0
2117 Female, age 91, right hemisphere 38.7
2764 Male, age 80, right hemisphere 36.6
1787 Male, age 76, left hemisphere 33.9
1938 Female, age 85, left hemisphere 32.5
2613 Female, age 94, left hemisphere 26.5
2686 Male, age 75, right hemisphere 24.0
Hippocampus, CA1
nTPM: 32.9
2749 Male, age 80, left hemisphere 38.3
2527 Male, age 74, both hemispheres 33.5
2082 Female, age 91, right hemisphere 32.2
2045 Male, age 76, both hemispheres 31.0
1873 Female, age 85, both hemispheres 29.8
Hippocampus, CA2
nTPM: 33.8
2249 Male, age 74, both hemispheres 40.7
2437 Female, age 94, left hemisphere 35.0
1963 Male, age 80, left hemisphere 34.0
1940 Female, age 85, left hemisphere 32.4
2113 Female, age 91, right hemisphere 31.7
1892 Male, age 76, both hemispheres 28.8
Hippocampus, CA3
nTPM: 31.2
2436 Male, age 74, both hemispheres 40.4
1891 Female, age 85, both hemispheres 32.0
2620 Female, age 94, left hemisphere 30.5
2861 Female, age 67, both hemispheres 28.7
2137 Male, age 80, left hemisphere 27.7
1867 Male, age 76, both hemispheres 27.6
Parahippocampal cortex
nTPM: 29.0
1990 Female, age 91, right hemisphere 33.1
2245 Female, age 91, both hemispheres 32.6
1850 Male, age 80, both hemispheres 30.9
2250 Female, age 67, right hemisphere 30.5
2018 Male, age 76, both hemispheres 28.7
1933 Female, age 85, both hemispheres 28.5
2532 Female, age 72, left hemisphere 28.4
2692 Male, age 74, both hemispheres 26.9
2693 Female, age 94, both hemispheres 25.8
2622 Female, age 67, right hemisphere 24.4
Perirhinal gyrus
nTPM: 29.4
1847 Female, age 91, left hemisphere 32.6
1794 Male, age 80, right hemisphere 29.6
2848 Male, age 76, right hemisphere 28.7
1841 Female, age 85, right hemisphere 28.3
2521 Female, age 94, right hemisphere 27.8
Subiculum
nTPM: 33.2
1977 Female, age 85, both hemispheres 36.3
1901 Male, age 80, both hemispheres 34.6
2042 Male, age 76, both hemispheres 34.5
2619 Male, age 74, both hemispheres 32.8
2729 Female, age 91, right hemisphere 30.9
2438 Female, age 94, left hemisphere 29.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 61.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 61.2
Samples: 255

Max nTPM: 98.4
Min nTPM: 37.2
Std nTPM: 10.5
Median nTPM: 60.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 98.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 94.1
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 88.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 87.2
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 86.2
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 84.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 83.9
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 83.0
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 82.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 80.9
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 80.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 74.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 74.3
FF:10169-103B7 60 years, female 77.8
FF:10153-102I9 76 years, female 70.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 46.3
Pig sample Sample description nTPM
Subiculum
nTPM: 38.3
Samples: 4

Max nTPM: 50.7
Min nTPM: 29.9
Sample A Female 50.7
Sample B Female 33.0
Sample C Male 39.4
Sample D Male 29.9
Dorsal hippocampus
nTPM: 46.3
Samples: 4

Max nTPM: 61.4
Min nTPM: 35.1
Sample A Female 61.4
Sample B Female 42.3
Sample C Male 46.2
Sample D Male 35.1
Entorhinal cortex
nTPM: 36.3
Samples: 4

Max nTPM: 42.8
Min nTPM: 26.9
Sample A Female 36.5
Sample B Female 42.8
Sample C Male 38.9
Sample D Male 26.9
Ventral hippocampus
nTPM: 41.5
Samples: 4

Max nTPM: 49.2
Min nTPM: 31.9
Sample A Female 39.7
Sample B Female 31.9
Sample C Male 49.2
Sample D Male 45.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 38.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.8
Samples: 4

Max nTPM: 37.2
Min nTPM: 34.5
Sample A Male 34.8
Sample B Male 37.2
Sample C Female 36.8
Sample D Female 34.5
Hippocampal formation
nTPM: 38.1
Samples: 4

Max nTPM: 41.9
Min nTPM: 35.5
Sample A Male 41.9
Sample B Male 35.5
Sample C Female 37.1
Sample D Female 37.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.0
73818779 Antisense, RP_050818_01_H09, Mouse strain C57BL/6J (56 days, male) 2.0

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