A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.7
nTPM
Monaco:
60.9
nTPM
Schmiedel:
108.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.7
HPA sample
nTPM
Memory B-cell nTPM: 16.7
Samples: 6
Max nTPM: 23.5
Min nTPM: 5.5
P10809_1017
15.0
P10809_1025
23.5
P10809_1044
5.5
P10809_1063
18.8
P10809_1092
19.9
P10809_1105
17.6
Naive B-cell nTPM: 13.1
Samples: 6
Max nTPM: 14.1
Min nTPM: 11.3
P10809_1011
12.8
P10809_1029
13.7
P10809_1048
11.3
P10809_1067
13.5
P10809_1091
13.3
P10809_1104
14.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 60.9
Samples: 4
Max nTPM: 84.6
Min nTPM: 45.7
RHH5310_R3677
56.6
RHH5218_R3590
45.7
RHH5247_R3619
84.6
RHH5276_R3648
56.5
Naive B-cell nTPM: 59.3
Samples: 4
Max nTPM: 85.9
Min nTPM: 42.7
RHH5308_R3675
55.0
RHH5216_R3588
85.9
RHH5245_R3617
53.8
RHH5274_R3646
42.7
Non-switched memory B-cell nTPM: 52.1
Samples: 4
Max nTPM: 60.4
Min nTPM: 40.1
RHH5309_R3676
60.4
RHH5217_R3589
57.2
RHH5246_R3618
50.7
RHH5275_R3647
40.1
Plasmablast nTPM: 57.4
Samples: 4
Max nTPM: 68.0
Min nTPM: 47.5
RHH5312_R3679
65.1
RHH5220_R3592
47.5
RHH5249_R3621
68.0
RHH5278_R3650
49.0
Switched memory B-cell nTPM: 58.2
Samples: 4
Max nTPM: 73.1
Min nTPM: 42.5
RHH5311_R3678
63.8
RHH5219_R3591
42.5
RHH5248_R3620
73.1
RHH5277_R3649
53.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
108.6
Schmiedel sample id
TPM
Naive B-cell TPM: 108.6
Samples: 91
Max TPM: 160.2
Min TPM: 83.5
B_CELL_NAIVE_1
160.2
B_CELL_NAIVE_2
150.6
B_CELL_NAIVE_3
147.3
B_CELL_NAIVE_4
140.7
B_CELL_NAIVE_5
139.5
B_CELL_NAIVE_6
139.0
B_CELL_NAIVE_7
133.6
B_CELL_NAIVE_8
130.4
B_CELL_NAIVE_9
128.6
B_CELL_NAIVE_10
125.7
B_CELL_NAIVE_11
123.6
B_CELL_NAIVE_12
122.4
B_CELL_NAIVE_13
120.4
B_CELL_NAIVE_14
120.2
B_CELL_NAIVE_15
120.2
B_CELL_NAIVE_16
119.6
B_CELL_NAIVE_17
118.7
B_CELL_NAIVE_18
118.3
B_CELL_NAIVE_19
115.4
B_CELL_NAIVE_20
114.9
B_CELL_NAIVE_21
114.6
B_CELL_NAIVE_22
114.2
B_CELL_NAIVE_23
114.1
B_CELL_NAIVE_24
114.1
B_CELL_NAIVE_25
114.1
B_CELL_NAIVE_26
114.0
B_CELL_NAIVE_27
112.7
B_CELL_NAIVE_28
112.5
B_CELL_NAIVE_29
111.7
B_CELL_NAIVE_30
110.9
B_CELL_NAIVE_31
110.7
B_CELL_NAIVE_32
110.6
B_CELL_NAIVE_33
110.4
B_CELL_NAIVE_34
110.3
B_CELL_NAIVE_35
109.9
B_CELL_NAIVE_36
109.8
B_CELL_NAIVE_37
109.5
B_CELL_NAIVE_38
109.5
B_CELL_NAIVE_39
108.4
B_CELL_NAIVE_40
108.0
B_CELL_NAIVE_41
107.6
B_CELL_NAIVE_42
107.4
B_CELL_NAIVE_43
107.2
B_CELL_NAIVE_44
107.0
B_CELL_NAIVE_45
106.8
B_CELL_NAIVE_46
106.7
B_CELL_NAIVE_47
106.7
B_CELL_NAIVE_48
106.5
B_CELL_NAIVE_49
106.2
B_CELL_NAIVE_50
105.9
B_CELL_NAIVE_51
105.8
B_CELL_NAIVE_52
105.6
B_CELL_NAIVE_53
104.6
B_CELL_NAIVE_54
104.3
B_CELL_NAIVE_55
104.2
B_CELL_NAIVE_56
104.1
B_CELL_NAIVE_57
103.5
B_CELL_NAIVE_58
103.0
B_CELL_NAIVE_59
102.8
B_CELL_NAIVE_60
102.7
B_CELL_NAIVE_61
102.6
B_CELL_NAIVE_62
102.5
B_CELL_NAIVE_63
102.1
B_CELL_NAIVE_64
101.2
B_CELL_NAIVE_65
100.6
B_CELL_NAIVE_66
100.4
B_CELL_NAIVE_67
100.3
B_CELL_NAIVE_68
100.0
B_CELL_NAIVE_69
99.5
B_CELL_NAIVE_70
99.3
B_CELL_NAIVE_71
98.8
B_CELL_NAIVE_72
98.1
B_CELL_NAIVE_73
98.0
B_CELL_NAIVE_74
97.5
B_CELL_NAIVE_75
97.5
B_CELL_NAIVE_76
96.9
B_CELL_NAIVE_77
96.7
B_CELL_NAIVE_78
94.8
B_CELL_NAIVE_79
93.6
B_CELL_NAIVE_80
92.8
B_CELL_NAIVE_81
92.7
B_CELL_NAIVE_82
92.4
B_CELL_NAIVE_83
92.3
B_CELL_NAIVE_84
92.2
B_CELL_NAIVE_85
91.3
B_CELL_NAIVE_86
89.5
B_CELL_NAIVE_87
89.3
B_CELL_NAIVE_88
88.3
B_CELL_NAIVE_89
87.2
B_CELL_NAIVE_90
83.8
B_CELL_NAIVE_91
83.5
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The Human Protein Atlas project is funded
