A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.9
nTPM
Monaco:
97.8
nTPM
Schmiedel:
113.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.9
HPA sample
nTPM
Classical monocyte nTPM: 15.5
Samples: 6
Max nTPM: 19.5
Min nTPM: 10.8
P10809_1003
18.4
P10809_1020
19.5
P10809_1039
14.5
P10809_1058
12.8
P10809_1080
16.8
P10809_1107
10.8
Intermediate monocyte nTPM: 24.2
Samples: 6
Max nTPM: 32.2
Min nTPM: 11.0
P10809_1004
26.4
P10809_1023
31.3
P10809_1042
24.6
P10809_1061
32.2
P10809_1081
19.6
P10809_1108
11.0
Non-classical monocyte nTPM: 24.9
Samples: 5
Max nTPM: 37.5
Min nTPM: 17.0
P10809_1005
27.6
P10809_1053
37.5
P10809_1072
25.6
P10809_1082
17.0
P10809_1109
17.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.8
Monaco sample
nTPM
Classical monocyte nTPM: 63.4
Samples: 4
Max nTPM: 91.2
Min nTPM: 49.7
RHH5313_R3680
49.7
RHH5221_R3593
91.2
RHH5250_R3622
57.7
RHH5279_R3651
55.0
Intermediate monocyte nTPM: 83.8
Samples: 4
Max nTPM: 116.9
Min nTPM: 68.6
RHH5314_R3681
70.4
RHH5222_R3594
116.9
RHH5251_R3623
68.6
RHH5280_R3652
79.3
Non-classical monocyte nTPM: 97.9
Samples: 4
Max nTPM: 125.7
Min nTPM: 83.1
RHH5315_R3682
83.1
RHH5223_R3595
125.7
RHH5252_R3624
94.8
RHH5281_R3653
87.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.7
Schmiedel sample id
TPM
Classical monocyte TPM: 51.7
Samples: 91
Max TPM: 65.6
Min TPM: 37.3
MONOCYTES_1
65.6
MONOCYTES_2
63.8
MONOCYTES_3
62.3
MONOCYTES_4
61.6
MONOCYTES_5
61.6
MONOCYTES_6
61.5
MONOCYTES_7
61.4
MONOCYTES_8
61.1
MONOCYTES_9
59.7
MONOCYTES_10
58.9
MONOCYTES_11
58.9
MONOCYTES_12
58.8
MONOCYTES_13
58.4
MONOCYTES_14
58.3
MONOCYTES_15
58.1
MONOCYTES_16
57.9
MONOCYTES_17
57.6
MONOCYTES_18
57.3
MONOCYTES_19
57.2
MONOCYTES_20
57.2
MONOCYTES_21
57.2
MONOCYTES_22
57.0
MONOCYTES_23
56.7
MONOCYTES_24
56.4
MONOCYTES_25
56.3
MONOCYTES_26
56.2
MONOCYTES_27
56.0
MONOCYTES_28
55.7
MONOCYTES_29
55.2
MONOCYTES_30
55.2
MONOCYTES_31
55.2
MONOCYTES_32
54.7
MONOCYTES_33
54.7
MONOCYTES_34
54.5
MONOCYTES_35
54.2
MONOCYTES_36
54.0
MONOCYTES_37
53.7
MONOCYTES_38
53.4
MONOCYTES_39
53.1
MONOCYTES_40
53.1
MONOCYTES_41
53.0
MONOCYTES_42
52.4
MONOCYTES_43
51.4
MONOCYTES_44
50.7
MONOCYTES_45
50.4
MONOCYTES_46
50.3
MONOCYTES_47
50.3
MONOCYTES_48
50.1
MONOCYTES_49
50.0
MONOCYTES_50
49.9
MONOCYTES_51
49.7
MONOCYTES_52
49.7
MONOCYTES_53
49.6
MONOCYTES_54
49.6
MONOCYTES_55
49.3
MONOCYTES_56
49.3
MONOCYTES_57
49.2
MONOCYTES_58
49.1
MONOCYTES_59
48.8
MONOCYTES_60
48.5
MONOCYTES_61
48.4
MONOCYTES_62
48.3
MONOCYTES_63
48.1
MONOCYTES_64
48.1
MONOCYTES_65
48.1
MONOCYTES_66
47.6
MONOCYTES_67
47.5
MONOCYTES_68
47.3
MONOCYTES_69
47.3
MONOCYTES_70
47.2
MONOCYTES_71
47.0
MONOCYTES_72
46.9
MONOCYTES_73
46.9
MONOCYTES_74
46.7
MONOCYTES_75
46.3
MONOCYTES_76
45.9
MONOCYTES_77
45.8
MONOCYTES_78
45.8
MONOCYTES_79
45.8
MONOCYTES_80
45.6
MONOCYTES_81
45.4
MONOCYTES_82
45.3
MONOCYTES_83
45.2
MONOCYTES_84
44.8
MONOCYTES_85
44.8
MONOCYTES_86
42.2
MONOCYTES_87
42.1
MONOCYTES_88
41.1
MONOCYTES_89
40.0
MONOCYTES_90
38.2
MONOCYTES_91
37.3
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Non-classical monocyte TPM: 113.7
Samples: 90
Max TPM: 157.4
Min TPM: 83.3
M2_1
157.4
M2_2
148.6
M2_3
147.5
M2_4
143.6
M2_5
140.5
M2_6
139.9
M2_7
138.7
M2_8
136.7
M2_9
135.1
M2_10
133.4
M2_11
132.7
M2_12
132.4
M2_13
131.0
M2_14
130.5
M2_15
128.8
M2_16
126.4
M2_17
125.9
M2_18
125.2
M2_19
124.8
M2_20
124.2
M2_21
122.5
M2_22
122.3
M2_23
122.0
M2_24
121.9
M2_25
121.0
M2_26
120.4
M2_27
119.5
M2_28
119.1
M2_29
118.9
M2_30
118.0
M2_31
117.7
M2_32
117.2
M2_33
116.8
M2_34
116.6
M2_35
116.5
M2_36
116.3
M2_37
115.8
M2_38
115.3
M2_39
114.9
M2_40
114.4
M2_41
114.2
M2_42
113.0
M2_43
112.9
M2_44
112.0
M2_45
111.9
M2_46
111.6
M2_47
111.3
M2_48
110.6
M2_49
110.1
M2_50
109.6
M2_51
109.6
M2_52
108.6
M2_53
108.3
M2_54
108.0
M2_55
107.9
M2_56
107.9
M2_57
107.3
M2_58
107.0
M2_59
106.9
M2_60
106.6
M2_61
106.6
M2_62
106.3
M2_63
106.1
M2_64
106.1
M2_65
106.0
M2_66
105.1
M2_67
105.0
M2_68
104.1
M2_69
103.1
M2_70
102.8
M2_71
102.1
M2_72
102.0
M2_73
101.6
M2_74
101.4
M2_75
100.3
M2_76
98.5
M2_77
98.0
M2_78
97.8
M2_79
97.7
M2_80
97.6
M2_81
97.5
M2_82
96.9
M2_83
95.8
M2_84
94.0
M2_85
93.7
M2_86
90.8
M2_87
90.5
M2_88
90.3
M2_89
87.4
M2_90
83.3
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