On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
26.2
nTPM
HPA Brain:
70.5
nTPM
GTEx:
26.2
nTPM
FANTOM5:
57.3
Scaled Tags Per Million
Macaque:
16.1
nTPM
Pig:
21.8
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
3402
Sample
Intensity
Spinal cord_01
6178
Spinal cord_02
3419
Spinal cord_03
9068
Spinal cord_04
3384
Spinal cord_05
2292
Spinal cord_06
6873
Spinal cord_07
3290
Spinal cord_08
3162
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.5
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 51.3
2818
Female, age 79, both hemispheres
79.0
2819
Male, age 47, both hemispheres
49.4
2193
Male, age 75, both hemispheres
42.5
2734
Male, age 80, both hemispheres
34.5
Cervical spinal cord, central gray nTPM: 70.5
1981
Female, age 72, midline
96.3
2048
Male, age 55, midline
83.4
2565
Male, age 75, midline
64.1
2816
Male, age 47, midline
55.0
2194
Female, age 79, both hemispheres
53.5
Cervical spinal cord, dorsal horn nTPM: 45.6
2173
Female, age 72, unknown
74.7
2296
Male, age 66, both hemispheres
54.3
2069
Male, age 47, both hemispheres
47.6
1877
Male, age 55, unknown
43.5
2721
Male, age 90, both hemispheres
36.5
2297
Male, age 75, both hemispheres
17.2
Cervical spinal cord, ventral horn nTPM: 61.5
2098
Female, age 72, unknown
120.6
2809
Male, age 90, both hemispheres
76.2
2295
Male, age 66, both hemispheres
65.3
2068
Male, age 55, unknown
39.1
2480
Male, age 75, both hemispheres
37.7
2820
Female, age 79, both hemispheres
30.4
Dorsal funiculus (white matter) nTPM: 66.3
2064
Female, age 79, both hemispheres
104.9
2812
Male, age 66, both hemispheres
69.0
2817
Male, age 47, both hemispheres
68.4
2128
Male, age 75, both hemispheres
45.0
2810
Male, age 90, both hemispheres
44.1
Lateral funiculus (white matter) nTPM: 42.7
2094
Female, age 79, both hemispheres
76.4
2099
Male, age 90, both hemispheres
44.7
2192
Male, age 75, both hemispheres
27.3
2294
Male, age 66, both hemispheres
22.3
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.2
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 26.2
Samples: 204
Max nTPM: 73.4
Min nTPM: 3.1
Std nTPM: 12.8
Median nTPM: 23.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
73.4
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
70.7
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
64.0
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
58.3
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
56.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
55.8
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
55.1
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
54.0
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
51.1
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
50.9
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
49.7
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
49.5
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
48.6
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
48.4
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
46.7
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
46.4
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
46.1
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
45.5
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
45.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
44.3
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
43.8
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
43.8
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
43.6
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
42.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
42.2
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
41.9
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
41.8
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
40.9
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
40.6
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
40.6
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
40.6
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
40.4
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
40.0
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
39.9
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
39.7
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
38.2
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
37.5
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
37.2
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
37.1
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
36.6
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
36.5
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
36.1
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
36.0
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
35.8
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
35.3
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
34.7
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
34.3
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
34.3
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
33.5
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
33.3
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
33.3
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
33.2
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
33.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
33.1
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
32.6
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
32.6
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
32.3
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
32.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
32.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
32.1
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
32.0
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
31.9
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
31.8
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
31.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
31.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
31.8
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
31.0
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
30.3
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
29.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
29.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
29.4
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
29.1
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
29.0
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
28.8
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
28.3
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
28.2
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
28.0
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
27.7
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
27.3
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
27.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
27.1
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
27.0
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
26.9
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
26.9
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
26.8
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
26.8
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
26.7
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
26.7
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
26.3
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
26.2
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
25.7
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
25.5
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
25.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
24.3
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
24.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
24.1
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
23.9
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
23.7
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
23.6
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
23.5
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
23.5
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
23.4
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
23.0
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
22.8
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
22.6
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
22.1
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
22.1
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
22.0
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
21.9
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
21.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
21.6
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
21.5
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
21.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
21.5
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
21.4
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
21.4
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
21.4
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
21.4
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
21.3
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
21.2
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
21.1
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
21.0
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
20.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
20.6
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
20.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
20.5
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
20.3
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
20.2
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
20.1
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
19.8
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
19.7
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
19.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
19.4
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
19.3
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
19.0
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
18.6
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
18.3
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
18.1
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
18.0
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
18.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
17.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
17.7
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
17.6
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
17.5
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
17.4
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
17.2
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
16.9
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
16.8
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
16.8
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
16.5
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
16.5
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
16.3
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
16.2
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
15.9
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
15.8
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
15.7
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
15.5
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
15.4
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
15.4
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
15.3
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
15.2
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
15.1
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
15.1
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
15.0
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
14.8
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
14.7
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
14.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
14.6
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
14.5
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
14.5
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
14.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
14.3
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
14.3
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
13.9
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
13.9
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
13.8
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
13.7
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
13.6
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
13.6
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
13.5
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
13.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
13.1
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
13.0
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
12.9
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
12.4
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
12.3
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
12.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
11.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
11.8
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
11.5
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
11.1
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
10.6
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
10.5
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
9.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
9.5
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
9.2
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
8.9
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
8.6
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
8.3
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
8.0
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
7.8
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
7.5
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
5.4
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
3.1
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.1
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 10.5
Samples: 2
Max nTPM: 13.3
Min nTPM: 7.6
Sample A
7.6
Sample B
13.3
Ventral spinal cord nTPM: 16.1
Samples: 1
Max nTPM: 16.1
Min nTPM: 16.1
Sample A
16.1
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.8
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 16.4
Samples: 4
Max nTPM: 20.6
Min nTPM: 13.8
Sample A
Female
13.8
Sample B
Female
16.0
Sample C
Male
20.6
Sample D
Male
15.1
Ventral spinal cord nTPM: 21.9
Samples: 4
Max nTPM: 24.6
Min nTPM: 19.6
Sample A
Female
19.6
Sample B
Female
24.6
Sample C
Male
21.6
Sample D
Male
21.6
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The Human Protein Atlas project is funded
