A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.0
nTPM
Monaco:
18.8
nTPM
Schmiedel:
52.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.0
HPA sample
nTPM
NK-cell nTPM: 11.0
Samples: 6
Max nTPM: 20.6
Min nTPM: 0.0
P10809_1013
9.0
P10809_1033
20.6
P10809_1052
11.2
P10809_1071
16.9
P10809_1093
0.0
P10809_1103
8.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.8
Monaco sample
nTPM
NK-cell nTPM: 18.8
Samples: 4
Max nTPM: 21.8
Min nTPM: 13.8
RHH5316_R3683
21.8
RHH5224_R3596
19.4
RHH5253_R3625
20.0
RHH5282_R3654
13.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.9
Schmiedel sample id
TPM
NK-cell TPM: 52.9
Samples: 90
Max TPM: 71.9
Min TPM: 34.1
NK_1
71.9
NK_2
70.0
NK_3
69.0
NK_4
65.3
NK_5
65.0
NK_6
63.9
NK_7
63.2
NK_8
62.6
NK_9
62.3
NK_10
62.2
NK_11
62.0
NK_12
60.8
NK_13
60.7
NK_14
60.2
NK_15
59.8
NK_16
59.8
NK_17
59.5
NK_18
59.0
NK_19
58.9
NK_20
58.8
NK_21
58.4
NK_22
58.4
NK_23
58.4
NK_24
58.3
NK_25
58.0
NK_26
57.9
NK_27
57.5
NK_28
57.1
NK_29
57.0
NK_30
56.7
NK_31
56.7
NK_32
56.5
NK_33
56.5
NK_34
55.2
NK_35
54.8
NK_36
54.8
NK_37
54.3
NK_38
54.3
NK_39
54.0
NK_40
53.8
NK_41
53.8
NK_42
53.7
NK_43
53.7
NK_44
53.5
NK_45
53.5
NK_46
53.0
NK_47
52.9
NK_48
52.6
NK_49
52.4
NK_50
52.4
NK_51
52.0
NK_52
51.7
NK_53
51.6
NK_54
51.6
NK_55
50.9
NK_56
50.8
NK_57
50.7
NK_58
50.7
NK_59
50.6
NK_60
50.3
NK_61
50.0
NK_62
49.9
NK_63
49.7
NK_64
49.2
NK_65
49.0
NK_66
48.7
NK_67
48.4
NK_68
48.1
NK_69
47.5
NK_70
47.3
NK_71
46.9
NK_72
46.6
NK_73
46.6
NK_74
46.3
NK_75
45.9
NK_76
45.8
NK_77
44.1
NK_78
43.9
NK_79
43.5
NK_80
43.4
NK_81
42.7
NK_82
41.1
NK_83
41.0
NK_84
40.7
NK_85
40.0
NK_86
39.8
NK_87
39.8
NK_88
38.2
NK_89
38.1
NK_90
34.1
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