A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.5
nTPM
Monaco:
36.4
nTPM
Schmiedel:
64.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.5
HPA sample
nTPM
Classical monocyte nTPM: 18.4
Samples: 6
Max nTPM: 24.8
Min nTPM: 12.6
P10809_1003
22.0
P10809_1020
22.7
P10809_1039
24.8
P10809_1058
12.6
P10809_1080
14.8
P10809_1107
13.4
Intermediate monocyte nTPM: 16.5
Samples: 6
Max nTPM: 23.3
Min nTPM: 6.3
P10809_1004
17.9
P10809_1023
23.3
P10809_1042
19.9
P10809_1061
6.3
P10809_1081
16.8
P10809_1108
14.7
Non-classical monocyte nTPM: 23.5
Samples: 5
Max nTPM: 58.3
Min nTPM: 10.6
P10809_1005
10.6
P10809_1053
19.2
P10809_1072
58.3
P10809_1082
13.0
P10809_1109
16.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.4
Monaco sample
nTPM
Classical monocyte nTPM: 36.4
Samples: 4
Max nTPM: 54.5
Min nTPM: 25.5
RHH5313_R3680
29.4
RHH5221_R3593
54.5
RHH5250_R3622
36.0
RHH5279_R3651
25.5
Intermediate monocyte nTPM: 31.4
Samples: 4
Max nTPM: 34.6
Min nTPM: 25.2
RHH5314_R3681
25.2
RHH5222_R3594
31.9
RHH5251_R3623
33.8
RHH5280_R3652
34.6
Non-classical monocyte nTPM: 26.9
Samples: 4
Max nTPM: 32.8
Min nTPM: 12.4
RHH5315_R3682
12.4
RHH5223_R3595
31.8
RHH5252_R3624
30.7
RHH5281_R3653
32.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.2
Schmiedel sample id
TPM
Classical monocyte TPM: 52.2
Samples: 91
Max TPM: 65.5
Min TPM: 39.0
MONOCYTES_1
65.5
MONOCYTES_2
64.9
MONOCYTES_3
64.7
MONOCYTES_4
63.7
MONOCYTES_5
63.2
MONOCYTES_6
62.5
MONOCYTES_7
62.2
MONOCYTES_8
62.2
MONOCYTES_9
62.0
MONOCYTES_10
61.1
MONOCYTES_11
61.0
MONOCYTES_12
60.9
MONOCYTES_13
60.6
MONOCYTES_14
59.7
MONOCYTES_15
59.6
MONOCYTES_16
59.0
MONOCYTES_17
58.8
MONOCYTES_18
58.3
MONOCYTES_19
58.2
MONOCYTES_20
57.4
MONOCYTES_21
57.1
MONOCYTES_22
57.0
MONOCYTES_23
56.3
MONOCYTES_24
56.2
MONOCYTES_25
56.1
MONOCYTES_26
56.0
MONOCYTES_27
55.5
MONOCYTES_28
55.5
MONOCYTES_29
55.4
MONOCYTES_30
55.3
MONOCYTES_31
55.2
MONOCYTES_32
55.0
MONOCYTES_33
54.7
MONOCYTES_34
54.7
MONOCYTES_35
54.5
MONOCYTES_36
54.3
MONOCYTES_37
54.3
MONOCYTES_38
54.1
MONOCYTES_39
53.9
MONOCYTES_40
53.7
MONOCYTES_41
53.6
MONOCYTES_42
53.4
MONOCYTES_43
52.6
MONOCYTES_44
52.2
MONOCYTES_45
52.0
MONOCYTES_46
52.0
MONOCYTES_47
51.3
MONOCYTES_48
51.2
MONOCYTES_49
50.9
MONOCYTES_50
50.8
MONOCYTES_51
50.7
MONOCYTES_52
50.7
MONOCYTES_53
50.7
MONOCYTES_54
50.7
MONOCYTES_55
50.5
MONOCYTES_56
50.5
MONOCYTES_57
50.4
MONOCYTES_58
50.1
MONOCYTES_59
50.1
MONOCYTES_60
50.1
MONOCYTES_61
49.9
MONOCYTES_62
49.7
MONOCYTES_63
49.5
MONOCYTES_64
49.1
MONOCYTES_65
48.7
MONOCYTES_66
48.5
MONOCYTES_67
48.3
MONOCYTES_68
47.4
MONOCYTES_69
47.4
MONOCYTES_70
47.4
MONOCYTES_71
46.9
MONOCYTES_72
46.8
MONOCYTES_73
46.4
MONOCYTES_74
45.9
MONOCYTES_75
45.9
MONOCYTES_76
45.8
MONOCYTES_77
45.1
MONOCYTES_78
44.7
MONOCYTES_79
43.9
MONOCYTES_80
43.7
MONOCYTES_81
43.6
MONOCYTES_82
43.6
MONOCYTES_83
43.3
MONOCYTES_84
42.8
MONOCYTES_85
41.6
MONOCYTES_86
41.5
MONOCYTES_87
40.9
MONOCYTES_88
40.3
MONOCYTES_89
40.3
MONOCYTES_90
39.4
MONOCYTES_91
39.0
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Non-classical monocyte TPM: 64.2
Samples: 90
Max TPM: 89.1
Min TPM: 47.6
M2_1
89.1
M2_2
83.9
M2_3
83.2
M2_4
79.7
M2_5
77.2
M2_6
76.6
M2_7
76.5
M2_8
76.0
M2_9
75.2
M2_10
75.0
M2_11
74.9
M2_12
74.2
M2_13
73.0
M2_14
72.7
M2_15
72.3
M2_16
72.1
M2_17
71.9
M2_18
71.8
M2_19
70.7
M2_20
70.5
M2_21
69.8
M2_22
69.4
M2_23
68.2
M2_24
68.0
M2_25
66.8
M2_26
66.7
M2_27
66.6
M2_28
66.6
M2_29
66.2
M2_30
65.9
M2_31
65.9
M2_32
65.4
M2_33
65.1
M2_34
65.0
M2_35
65.0
M2_36
65.0
M2_37
64.7
M2_38
64.6
M2_39
64.6
M2_40
64.5
M2_41
64.3
M2_42
64.0
M2_43
63.8
M2_44
63.7
M2_45
63.6
M2_46
63.6
M2_47
63.5
M2_48
63.3
M2_49
63.1
M2_50
62.9
M2_51
62.6
M2_52
62.5
M2_53
62.4
M2_54
62.2
M2_55
61.9
M2_56
61.7
M2_57
61.3
M2_58
61.3
M2_59
61.1
M2_60
60.8
M2_61
60.6
M2_62
59.6
M2_63
59.3
M2_64
59.1
M2_65
59.1
M2_66
59.0
M2_67
58.9
M2_68
58.6
M2_69
58.5
M2_70
58.0
M2_71
57.8
M2_72
57.7
M2_73
57.6
M2_74
56.9
M2_75
56.8
M2_76
56.1
M2_77
56.1
M2_78
56.0
M2_79
55.4
M2_80
55.1
M2_81
54.9
M2_82
54.7
M2_83
54.0
M2_84
53.9
M2_85
53.8
M2_86
53.8
M2_87
52.7
M2_88
51.2
M2_89
50.3
M2_90
47.6
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