MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.3 nTPM
HPA Brain:73.5 nTPM
GTEx:16.3 nTPM
FANTOM5:113.4 Scaled Tags Per Million
Pig:27.9 nTPM
Mouse:41.2 nTPM
Allen mouse:14.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 73.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.9
2019 Male, age 18, unknown 79.9
1830 Male, age 51, unknown 77.5
1833 Male, age 53, unknown 77.1
1870 Female, age 42, unknown 76.9
2411 Female, age 72, unknown 72.4
2586 Male, age 75, left hemisphere 67.2
2666 Male, age 74, left hemisphere 66.4
2219 Male, age 76, both hemispheres 61.1
2828 Female, age 72, unknown 60.6
1827 Male, age 72, unknown 60.1
Dorsal raphe nucleus
nTPM: 57.7
2750 Male, age 76, both hemispheres 65.1
2016 Female, age 72, unknown 63.3
2298 Female, age 72, unknown 57.8
1828 Male, age 53, unknown 55.2
2047 Male, age 72, unknown 47.2
Inferior colliculus
nTPM: 62.1
2849 Male, age 72, unknown 66.1
1890 Male, age 53, unknown 63.1
1848 Female, age 42, unknown 62.8
2097 Female, age 72, unknown 56.1
Median raphe nucleus
nTPM: 62.8
2220 Male, age 76, midline 62.8
Periaquaductal grey, anterior
nTPM: 62.3
2502 Female, age 75, unknown 70.8
1947 Male, age 18, unknown 62.5
1795 Male, age 51, unknown 53.5
Periaquaductal grey, dorsal
nTPM: 62.1
2850 Male, age 76, both hemispheres 70.6
2464 Female, age 72, unknown 61.2
1831 Male, age 72, unknown 59.4
1840 Male, age 53, unknown 57.4
Periaquaductal grey, lateral
nTPM: 65.5
2272 Male, age 74, both hemispheres 70.6
2140 Male, age 76, both hemispheres 68.4
2053 Male, age 18, unknown 57.6
Pretectal area
nTPM: 65.4
1815 Male, age 53, unknown 73.0
2273 Male, age 74, both hemispheres 69.6
1817 Female, age 42, unknown 66.7
2316 Male, age 76, right hemisphere 66.1
2007 Male, age 72, unknown 65.7
2224 Female, age 72, unknown 65.7
2667 Female, age 75, unknown 64.6
1816 Male, age 51, unknown 64.4
2407 Male, age 75, both hemispheres 62.1
2825 Male, age 18, unknown 61.9
1944 Female, age 72, unknown 59.5
Red nucleus
nTPM: 73.5
1865 Male, age 51, unknown 82.9
2503 Female, age 72, unknown 82.5
1904 Male, age 53, unknown 79.0
2785 Male, age 18, unknown 77.3
2227 Male, age 72, unknown 74.7
1954 Female, age 42, unknown 73.2
2769 Male, age 72, unknown 71.0
1821 Female, age 72, unknown 70.3
2584 Male, age 75, left hemisphere 68.4
2725 Female, age 75, unknown 68.0
2823 Male, age 76, right hemisphere 67.4
2588 Male, age 74, left hemisphere 67.1
Substantia nigra
nTPM: 67.3
2241 Male, age 72, unknown 79.1
2409 Female, age 72, unknown 76.9
2583 Male, age 75, right hemisphere 75.0
1851 Male, age 51, unknown 69.7
2699 Male, age 18, unknown 67.1
1916 Female, age 42, unknown 66.2
1889 Female, age 72, unknown 64.5
2590 Female, age 75, unknown 64.2
1941 Male, age 53, unknown 59.3
2665 Male, age 74, both hemispheres 51.4
Superior colliculus
nTPM: 69.7
1913 Female, age 42, unknown 89.0
1995 Male, age 72, unknown 80.7
2587 Male, age 74, left hemisphere 69.7
2668 Female, age 75, unknown 68.5
1839 Male, age 51, unknown 67.2
2261 Male, age 18, unknown 67.2
1895 Male, age 76, right hemisphere 66.9
2087 Female, age 72, unknown 66.7
1796 Male, age 53, unknown 64.7
2664 Male, age 75, both hemispheres 56.1
Ventral tegmental area
nTPM: 67.8
2223 Female, age 72, unknown 80.5
2410 Female, age 72, unknown 72.8
2021 Male, age 53, unknown 67.0
1915 Female, age 42, unknown 64.4
1942 Male, age 51, unknown 61.9
2218 Male, age 76, both hemispheres 60.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.3
Samples: 183

Max nTPM: 62.7
Min nTPM: 6.8
Std nTPM: 5.6
Median nTPM: 15.3
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 62.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 41.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 29.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 28.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 27.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 27.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 25.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 25.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 25.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 113.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.4
FF:10158-103A5 76 years, female 113.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.9
Samples: 4

Max nTPM: 30.4
Min nTPM: 23.6
Sample A Female 29.6
Sample B Female 23.6
Sample C Male 30.4
Sample D Male 28.1
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 27.7
Min nTPM: 24.0
Sample A Female 26.3
Sample B Female 26.6
Sample C Male 27.7
Sample D Male 24.0
Periaqueductal gray
nTPM: 20.8
Samples: 3

Max nTPM: 22.1
Min nTPM: 18.7
Sample B Female 21.5
Sample C Male 18.7
Sample D Male 22.1
Superior colliculi
nTPM: 20.8
Samples: 4

Max nTPM: 23.4
Min nTPM: 15.4
Sample A Female 21.1
Sample B Female 15.4
Sample C Male 23.3
Sample D Male 23.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 41.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 42.6
Min nTPM: 39.6
Sample A Male 39.6
Sample B Male 40.5
Sample C Female 42.6
Sample D Female 41.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.0
69262342 Antisense, RP_050303_02_B12, Mouse strain C57BL/6J (56 days, male) 14.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo