A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.5
nTPM
Monaco:
88.6
nTPM
Schmiedel:
239.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.5
HPA sample
nTPM
Memory B-cell nTPM: 7.5
Samples: 6
Max nTPM: 11.4
Min nTPM: 3.6
P10809_1017
8.6
P10809_1025
3.6
P10809_1044
8.1
P10809_1063
6.6
P10809_1092
11.4
P10809_1105
6.5
Naive B-cell nTPM: 7.0
Samples: 6
Max nTPM: 10.4
Min nTPM: 4.0
P10809_1011
8.5
P10809_1029
4.0
P10809_1048
10.4
P10809_1067
6.4
P10809_1091
5.5
P10809_1104
7.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 45.4
Samples: 4
Max nTPM: 53.8
Min nTPM: 35.5
RHH5310_R3677
39.9
RHH5218_R3590
53.8
RHH5247_R3619
52.4
RHH5276_R3648
35.5
Naive B-cell nTPM: 53.8
Samples: 4
Max nTPM: 103.8
Min nTPM: 21.0
RHH5308_R3675
21.0
RHH5216_R3588
103.8
RHH5245_R3617
60.4
RHH5274_R3646
29.9
Non-switched memory B-cell nTPM: 88.6
Samples: 4
Max nTPM: 156.1
Min nTPM: 47.1
RHH5309_R3676
47.1
RHH5217_R3589
156.1
RHH5246_R3618
101.4
RHH5275_R3647
49.7
Plasmablast nTPM: 19.1
Samples: 4
Max nTPM: 27.1
Min nTPM: 12.4
RHH5312_R3679
16.4
RHH5220_R3592
27.1
RHH5249_R3621
20.4
RHH5278_R3650
12.4
Switched memory B-cell nTPM: 48.9
Samples: 4
Max nTPM: 72.9
Min nTPM: 32.2
RHH5311_R3678
40.8
RHH5219_R3591
72.9
RHH5248_R3620
49.6
RHH5277_R3649
32.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
239.5
Schmiedel sample id
TPM
Naive B-cell TPM: 239.5
Samples: 91
Max TPM: 679.9
Min TPM: 97.0
B_CELL_NAIVE_1
679.9
B_CELL_NAIVE_2
553.4
B_CELL_NAIVE_3
470.3
B_CELL_NAIVE_4
451.6
B_CELL_NAIVE_5
409.8
B_CELL_NAIVE_6
393.3
B_CELL_NAIVE_7
392.9
B_CELL_NAIVE_8
388.7
B_CELL_NAIVE_9
378.1
B_CELL_NAIVE_10
376.6
B_CELL_NAIVE_11
364.5
B_CELL_NAIVE_12
338.6
B_CELL_NAIVE_13
329.5
B_CELL_NAIVE_14
327.3
B_CELL_NAIVE_15
325.3
B_CELL_NAIVE_16
324.4
B_CELL_NAIVE_17
323.1
B_CELL_NAIVE_18
315.7
B_CELL_NAIVE_19
306.5
B_CELL_NAIVE_20
306.1
B_CELL_NAIVE_21
305.7
B_CELL_NAIVE_22
305.0
B_CELL_NAIVE_23
298.0
B_CELL_NAIVE_24
287.4
B_CELL_NAIVE_25
287.2
B_CELL_NAIVE_26
286.4
B_CELL_NAIVE_27
284.7
B_CELL_NAIVE_28
284.4
B_CELL_NAIVE_29
272.0
B_CELL_NAIVE_30
264.2
B_CELL_NAIVE_31
263.6
B_CELL_NAIVE_32
262.9
B_CELL_NAIVE_33
255.9
B_CELL_NAIVE_34
248.2
B_CELL_NAIVE_35
246.6
B_CELL_NAIVE_36
245.3
B_CELL_NAIVE_37
242.1
B_CELL_NAIVE_38
237.8
B_CELL_NAIVE_39
236.9
B_CELL_NAIVE_40
233.9
B_CELL_NAIVE_41
229.9
B_CELL_NAIVE_42
227.3
B_CELL_NAIVE_43
224.5
B_CELL_NAIVE_44
221.1
B_CELL_NAIVE_45
218.4
B_CELL_NAIVE_46
214.3
B_CELL_NAIVE_47
213.9
B_CELL_NAIVE_48
210.5
B_CELL_NAIVE_49
207.9
B_CELL_NAIVE_50
203.3
B_CELL_NAIVE_51
200.6
B_CELL_NAIVE_52
200.1
B_CELL_NAIVE_53
200.1
B_CELL_NAIVE_54
195.1
B_CELL_NAIVE_55
192.3
B_CELL_NAIVE_56
188.0
B_CELL_NAIVE_57
185.2
B_CELL_NAIVE_58
184.1
B_CELL_NAIVE_59
183.0
B_CELL_NAIVE_60
178.2
B_CELL_NAIVE_61
177.5
B_CELL_NAIVE_62
175.4
B_CELL_NAIVE_63
174.3
B_CELL_NAIVE_64
173.7
B_CELL_NAIVE_65
173.0
B_CELL_NAIVE_66
171.2
B_CELL_NAIVE_67
170.8
B_CELL_NAIVE_68
166.6
B_CELL_NAIVE_69
161.6
B_CELL_NAIVE_70
159.5
B_CELL_NAIVE_71
159.0
B_CELL_NAIVE_72
157.0
B_CELL_NAIVE_73
152.0
B_CELL_NAIVE_74
151.3
B_CELL_NAIVE_75
149.6
B_CELL_NAIVE_76
149.4
B_CELL_NAIVE_77
149.0
B_CELL_NAIVE_78
148.6
B_CELL_NAIVE_79
144.9
B_CELL_NAIVE_80
144.5
B_CELL_NAIVE_81
143.1
B_CELL_NAIVE_82
139.6
B_CELL_NAIVE_83
139.3
B_CELL_NAIVE_84
138.4
B_CELL_NAIVE_85
129.2
B_CELL_NAIVE_86
127.9
B_CELL_NAIVE_87
126.9
B_CELL_NAIVE_88
123.1
B_CELL_NAIVE_89
121.0
B_CELL_NAIVE_90
115.5
B_CELL_NAIVE_91
97.0
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