A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.4
nTPM
Monaco:
232.9
nTPM
Schmiedel:
836.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.4
HPA sample
nTPM
Classical monocyte nTPM: 19.4
Samples: 6
Max nTPM: 26.3
Min nTPM: 9.6
P10809_1003
26.3
P10809_1020
18.5
P10809_1039
19.2
P10809_1058
22.1
P10809_1080
20.8
P10809_1107
9.6
Intermediate monocyte nTPM: 2.3
Samples: 6
Max nTPM: 6.5
Min nTPM: 0.1
P10809_1004
6.5
P10809_1023
0.7
P10809_1042
3.3
P10809_1061
0.1
P10809_1081
2.5
P10809_1108
0.8
Non-classical monocyte nTPM: 1.0
Samples: 5
Max nTPM: 1.8
Min nTPM: 0.0
P10809_1005
1.8
P10809_1053
1.1
P10809_1072
0.0
P10809_1082
0.5
P10809_1109
1.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
232.9
Monaco sample
nTPM
Classical monocyte nTPM: 232.9
Samples: 4
Max nTPM: 305.6
Min nTPM: 181.5
RHH5313_R3680
181.5
RHH5221_R3593
305.6
RHH5250_R3622
221.1
RHH5279_R3651
223.2
Intermediate monocyte nTPM: 31.2
Samples: 4
Max nTPM: 45.1
Min nTPM: 13.5
RHH5314_R3681
13.5
RHH5222_R3594
45.1
RHH5251_R3623
38.9
RHH5280_R3652
27.3
Non-classical monocyte nTPM: 7.7
Samples: 4
Max nTPM: 12.8
Min nTPM: 4.5
RHH5315_R3682
4.7
RHH5223_R3595
4.5
RHH5252_R3624
12.8
RHH5281_R3653
8.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
836.7
Schmiedel sample id
TPM
Classical monocyte TPM: 836.7
Samples: 91
Max TPM: 1385.8
Min TPM: 346.9
MONOCYTES_1
1385.8
MONOCYTES_2
1265.2
MONOCYTES_3
1249.2
MONOCYTES_4
1211.9
MONOCYTES_5
1193.6
MONOCYTES_6
1164.5
MONOCYTES_7
1159.6
MONOCYTES_8
1141.9
MONOCYTES_9
1138.3
MONOCYTES_10
1132.6
MONOCYTES_11
1060.6
MONOCYTES_12
1057.2
MONOCYTES_13
1048.5
MONOCYTES_14
1031.1
MONOCYTES_15
1018.0
MONOCYTES_16
1009.9
MONOCYTES_17
1004.7
MONOCYTES_18
1003.0
MONOCYTES_19
996.4
MONOCYTES_20
986.6
MONOCYTES_21
984.5
MONOCYTES_22
972.6
MONOCYTES_23
962.5
MONOCYTES_24
957.4
MONOCYTES_25
954.0
MONOCYTES_26
948.9
MONOCYTES_27
948.1
MONOCYTES_28
947.1
MONOCYTES_29
937.1
MONOCYTES_30
930.9
MONOCYTES_31
923.8
MONOCYTES_32
919.1
MONOCYTES_33
918.2
MONOCYTES_34
901.9
MONOCYTES_35
898.8
MONOCYTES_36
893.0
MONOCYTES_37
877.1
MONOCYTES_38
874.6
MONOCYTES_39
873.2
MONOCYTES_40
872.6
MONOCYTES_41
868.2
MONOCYTES_42
867.4
MONOCYTES_43
863.2
MONOCYTES_44
859.2
MONOCYTES_45
853.5
MONOCYTES_46
846.0
MONOCYTES_47
841.4
MONOCYTES_48
839.6
MONOCYTES_49
838.9
MONOCYTES_50
836.8
MONOCYTES_51
808.8
MONOCYTES_52
801.1
MONOCYTES_53
800.5
MONOCYTES_54
792.0
MONOCYTES_55
791.9
MONOCYTES_56
791.3
MONOCYTES_57
790.3
MONOCYTES_58
781.5
MONOCYTES_59
775.2
MONOCYTES_60
770.1
MONOCYTES_61
763.0
MONOCYTES_62
755.8
MONOCYTES_63
748.0
MONOCYTES_64
745.5
MONOCYTES_65
740.3
MONOCYTES_66
722.1
MONOCYTES_67
686.0
MONOCYTES_68
681.1
MONOCYTES_69
669.4
MONOCYTES_70
665.4
MONOCYTES_71
664.6
MONOCYTES_72
656.1
MONOCYTES_73
651.2
MONOCYTES_74
623.5
MONOCYTES_75
609.1
MONOCYTES_76
607.1
MONOCYTES_77
605.4
MONOCYTES_78
588.0
MONOCYTES_79
583.2
MONOCYTES_80
557.9
MONOCYTES_81
557.7
MONOCYTES_82
555.3
MONOCYTES_83
554.1
MONOCYTES_84
551.5
MONOCYTES_85
546.1
MONOCYTES_86
543.2
MONOCYTES_87
534.7
MONOCYTES_88
522.3
MONOCYTES_89
518.0
MONOCYTES_90
419.0
MONOCYTES_91
346.9
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Non-classical monocyte TPM: 10.9
Samples: 90
Max TPM: 39.5
Min TPM: 2.3
M2_1
39.5
M2_2
39.1
M2_3
33.4
M2_4
32.6
M2_5
31.7
M2_6
24.3
M2_7
24.1
M2_8
20.8
M2_9
20.6
M2_10
20.5
M2_11
19.4
M2_12
17.4
M2_13
17.3
M2_14
17.3
M2_15
17.0
M2_16
16.2
M2_17
15.7
M2_18
15.0
M2_19
14.9
M2_20
14.9
M2_21
14.8
M2_22
13.4
M2_23
13.3
M2_24
13.0
M2_25
13.0
M2_26
12.9
M2_27
12.9
M2_28
12.9
M2_29
12.6
M2_30
11.9
M2_31
11.8
M2_32
11.7
M2_33
11.7
M2_34
10.9
M2_35
10.8
M2_36
10.4
M2_37
10.2
M2_38
10.1
M2_39
10.0
M2_40
10.0
M2_41
9.8
M2_42
9.8
M2_43
9.0
M2_44
8.9
M2_45
8.8
M2_46
8.8
M2_47
8.6
M2_48
8.5
M2_49
8.5
M2_50
8.3
M2_51
8.3
M2_52
8.2
M2_53
7.8
M2_54
7.6
M2_55
7.6
M2_56
7.4
M2_57
7.2
M2_58
7.0
M2_59
7.0
M2_60
6.6
M2_61
6.4
M2_62
6.4
M2_63
6.1
M2_64
6.0
M2_65
5.7
M2_66
5.6
M2_67
5.5
M2_68
5.1
M2_69
5.1
M2_70
4.8
M2_71
4.7
M2_72
4.7
M2_73
4.5
M2_74
4.2
M2_75
4.1
M2_76
4.0
M2_77
3.9
M2_78
3.8
M2_79
3.7
M2_80
3.6
M2_81
3.6
M2_82
3.5
M2_83
3.5
M2_84
3.4
M2_85
3.3
M2_86
3.3
M2_87
3.3
M2_88
3.1
M2_89
2.6
M2_90
2.3
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