MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.8 nTPM
HPA Brain:85.5 nTPM
GTEx:53.8 nTPM
FANTOM5:9.4 Scaled Tags Per Million
Pig:30.1 nTPM
Mouse:25.9 nTPM
Allen mouse:6.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 85.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.8
2586 Male, age 75, left hemisphere 110.7
2219 Male, age 76, both hemispheres 76.4
1827 Male, age 72, unknown 70.2
1833 Male, age 53, unknown 64.9
2411 Female, age 72, unknown 61.1
2666 Male, age 74, left hemisphere 60.5
1870 Female, age 42, unknown 60.0
2828 Female, age 72, unknown 59.6
1830 Male, age 51, unknown 50.8
2019 Male, age 18, unknown 34.1
Dorsal raphe nucleus
nTPM: 72.1
2047 Male, age 72, unknown 90.0
2298 Female, age 72, unknown 90.0
1828 Male, age 53, unknown 62.4
2750 Male, age 76, both hemispheres 60.2
2016 Female, age 72, unknown 57.9
Inferior colliculus
nTPM: 76.6
2849 Male, age 72, unknown 85.5
2097 Female, age 72, unknown 80.4
1848 Female, age 42, unknown 77.9
1890 Male, age 53, unknown 62.6
Median raphe nucleus
nTPM: 85.3
2220 Male, age 76, midline 85.3
Periaquaductal grey, anterior
nTPM: 85.5
2502 Female, age 75, unknown 114.4
1795 Male, age 51, unknown 82.6
1947 Male, age 18, unknown 59.5
Periaquaductal grey, dorsal
nTPM: 70.8
1840 Male, age 53, unknown 97.0
2464 Female, age 72, unknown 75.9
2850 Male, age 76, both hemispheres 55.3
1831 Male, age 72, unknown 55.0
Periaquaductal grey, lateral
nTPM: 58.5
2053 Male, age 18, unknown 62.1
2140 Male, age 76, both hemispheres 61.6
2272 Male, age 74, both hemispheres 51.7
Pretectal area
nTPM: 52.3
2224 Female, age 72, unknown 85.4
2825 Male, age 18, unknown 78.9
1816 Male, age 51, unknown 56.8
2316 Male, age 76, right hemisphere 52.2
2007 Male, age 72, unknown 51.2
1944 Female, age 72, unknown 48.2
2667 Female, age 75, unknown 45.2
1817 Female, age 42, unknown 45.1
2407 Male, age 75, both hemispheres 40.6
1815 Male, age 53, unknown 39.4
2273 Male, age 74, both hemispheres 32.6
Red nucleus
nTPM: 34.7
2584 Male, age 75, left hemisphere 78.8
2769 Male, age 72, unknown 40.3
2725 Female, age 75, unknown 39.8
2227 Male, age 72, unknown 37.3
2785 Male, age 18, unknown 35.4
2588 Male, age 74, left hemisphere 34.4
2503 Female, age 72, unknown 32.6
1954 Female, age 42, unknown 28.8
1904 Male, age 53, unknown 23.2
1821 Female, age 72, unknown 23.0
2823 Male, age 76, right hemisphere 21.9
1865 Male, age 51, unknown 20.8
Substantia nigra
nTPM: 62.5
2665 Male, age 74, both hemispheres 95.8
1916 Female, age 42, unknown 78.9
1851 Male, age 51, unknown 78.7
2699 Male, age 18, unknown 74.9
2241 Male, age 72, unknown 62.3
1941 Male, age 53, unknown 60.1
2583 Male, age 75, right hemisphere 51.1
1889 Female, age 72, unknown 46.9
2409 Female, age 72, unknown 39.0
2590 Female, age 75, unknown 37.5
Superior colliculus
nTPM: 57.7
1796 Male, age 53, unknown 97.2
2664 Male, age 75, both hemispheres 70.0
1839 Male, age 51, unknown 66.9
2261 Male, age 18, unknown 60.8
1895 Male, age 76, right hemisphere 59.9
2668 Female, age 75, unknown 57.0
2587 Male, age 74, left hemisphere 53.8
2087 Female, age 72, unknown 53.3
1913 Female, age 42, unknown 30.8
1995 Male, age 72, unknown 27.9
Ventral tegmental area
nTPM: 85.0
2223 Female, age 72, unknown 126.0
1915 Female, age 42, unknown 92.0
1942 Male, age 51, unknown 85.6
2021 Male, age 53, unknown 76.2
2218 Male, age 76, both hemispheres 74.1
2410 Female, age 72, unknown 56.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.8
Samples: 183

Max nTPM: 558.7
Min nTPM: 3.2
Std nTPM: 65.3
Median nTPM: 40.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 558.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 476.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 441.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 284.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 201.5
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 149.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 108.9
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 107.0
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 102.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 102.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 98.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.4
FF:10158-103A5 76 years, female 9.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.9
Samples: 4

Max nTPM: 23.7
Min nTPM: 7.7
Sample A Female 21.9
Sample B Female 14.2
Sample C Male 23.7
Sample D Male 7.7
Midbrain
nTPM: 30.2
Samples: 4

Max nTPM: 56.1
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 18.3
Sample C Male 38.5
Sample D Male 56.1
Periaqueductal gray
nTPM: 18.4
Samples: 3

Max nTPM: 23.1
Min nTPM: 15.1
Sample B Female 17.0
Sample C Male 23.1
Sample D Male 15.1
Superior colliculi
nTPM: 28.0
Samples: 4

Max nTPM: 34.0
Min nTPM: 21.7
Sample A Female 30.5
Sample B Female 25.6
Sample C Male 21.7
Sample D Male 34.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 30.7
Min nTPM: 22.6
Sample A Male 30.7
Sample B Male 22.6
Sample C Female 23.9
Sample D Female 26.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
69352896 Antisense, RP_050412_01_D02, Mouse strain C57BL/6J (56 days, male) 6.3
72128746 Antisense, RP_051017_04_C02, Mouse strain C57BL/6J (56 days, male) 5.9

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