A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.4
nTPM
Monaco:
132.2
nTPM
Schmiedel:
126.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.4
HPA sample
nTPM
Memory B-cell nTPM: 14.3
Samples: 6
Max nTPM: 27.6
Min nTPM: 8.5
P10809_1017
11.3
P10809_1025
13.4
P10809_1044
27.6
P10809_1063
10.9
P10809_1092
14.1
P10809_1105
8.5
Naive B-cell nTPM: 17.4
Samples: 6
Max nTPM: 62.2
Min nTPM: 6.1
P10809_1011
6.1
P10809_1029
11.8
P10809_1048
62.2
P10809_1067
7.4
P10809_1091
7.8
P10809_1104
9.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
132.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 61.3
Samples: 4
Max nTPM: 68.5
Min nTPM: 54.4
RHH5310_R3677
64.5
RHH5218_R3590
68.5
RHH5247_R3619
54.4
RHH5276_R3648
57.7
Naive B-cell nTPM: 76.4
Samples: 4
Max nTPM: 86.8
Min nTPM: 62.1
RHH5308_R3675
62.1
RHH5216_R3588
76.6
RHH5245_R3617
80.2
RHH5274_R3646
86.8
Non-switched memory B-cell nTPM: 69.1
Samples: 4
Max nTPM: 92.2
Min nTPM: 51.5
RHH5309_R3676
51.5
RHH5217_R3589
79.0
RHH5246_R3618
53.5
RHH5275_R3647
92.2
Plasmablast nTPM: 132.2
Samples: 4
Max nTPM: 163.4
Min nTPM: 112.9
RHH5312_R3679
163.4
RHH5220_R3592
112.9
RHH5249_R3621
128.5
RHH5278_R3650
124.0
Switched memory B-cell nTPM: 55.4
Samples: 4
Max nTPM: 82.4
Min nTPM: 39.3
RHH5311_R3678
39.3
RHH5219_R3591
52.1
RHH5248_R3620
47.8
RHH5277_R3649
82.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
126.3
Schmiedel sample id
TPM
Naive B-cell TPM: 126.3
Samples: 91
Max TPM: 183.0
Min TPM: 95.9
B_CELL_NAIVE_1
183.0
B_CELL_NAIVE_2
175.9
B_CELL_NAIVE_3
172.5
B_CELL_NAIVE_4
168.3
B_CELL_NAIVE_5
163.6
B_CELL_NAIVE_6
161.7
B_CELL_NAIVE_7
160.8
B_CELL_NAIVE_8
154.9
B_CELL_NAIVE_9
149.9
B_CELL_NAIVE_10
148.2
B_CELL_NAIVE_11
145.4
B_CELL_NAIVE_12
144.7
B_CELL_NAIVE_13
142.7
B_CELL_NAIVE_14
141.9
B_CELL_NAIVE_15
138.1
B_CELL_NAIVE_16
137.8
B_CELL_NAIVE_17
137.3
B_CELL_NAIVE_18
136.9
B_CELL_NAIVE_19
136.6
B_CELL_NAIVE_20
135.2
B_CELL_NAIVE_21
134.4
B_CELL_NAIVE_22
134.2
B_CELL_NAIVE_23
134.1
B_CELL_NAIVE_24
132.5
B_CELL_NAIVE_25
132.1
B_CELL_NAIVE_26
132.1
B_CELL_NAIVE_27
132.0
B_CELL_NAIVE_28
131.5
B_CELL_NAIVE_29
131.4
B_CELL_NAIVE_30
131.2
B_CELL_NAIVE_31
130.7
B_CELL_NAIVE_32
130.6
B_CELL_NAIVE_33
129.8
B_CELL_NAIVE_34
129.7
B_CELL_NAIVE_35
129.6
B_CELL_NAIVE_36
129.5
B_CELL_NAIVE_37
129.5
B_CELL_NAIVE_38
128.4
B_CELL_NAIVE_39
128.1
B_CELL_NAIVE_40
127.8
B_CELL_NAIVE_41
127.6
B_CELL_NAIVE_42
127.3
B_CELL_NAIVE_43
126.4
B_CELL_NAIVE_44
125.6
B_CELL_NAIVE_45
125.6
B_CELL_NAIVE_46
125.4
B_CELL_NAIVE_47
125.0
B_CELL_NAIVE_48
124.9
B_CELL_NAIVE_49
124.9
B_CELL_NAIVE_50
124.6
B_CELL_NAIVE_51
124.4
B_CELL_NAIVE_52
123.1
B_CELL_NAIVE_53
123.0
B_CELL_NAIVE_54
121.4
B_CELL_NAIVE_55
121.4
B_CELL_NAIVE_56
121.0
B_CELL_NAIVE_57
120.2
B_CELL_NAIVE_58
119.9
B_CELL_NAIVE_59
119.4
B_CELL_NAIVE_60
118.8
B_CELL_NAIVE_61
117.3
B_CELL_NAIVE_62
117.2
B_CELL_NAIVE_63
116.6
B_CELL_NAIVE_64
116.2
B_CELL_NAIVE_65
115.8
B_CELL_NAIVE_66
115.0
B_CELL_NAIVE_67
114.7
B_CELL_NAIVE_68
114.4
B_CELL_NAIVE_69
113.8
B_CELL_NAIVE_70
112.9
B_CELL_NAIVE_71
112.9
B_CELL_NAIVE_72
112.7
B_CELL_NAIVE_73
112.6
B_CELL_NAIVE_74
111.3
B_CELL_NAIVE_75
110.6
B_CELL_NAIVE_76
110.1
B_CELL_NAIVE_77
109.3
B_CELL_NAIVE_78
108.1
B_CELL_NAIVE_79
107.1
B_CELL_NAIVE_80
106.0
B_CELL_NAIVE_81
105.7
B_CELL_NAIVE_82
105.5
B_CELL_NAIVE_83
105.2
B_CELL_NAIVE_84
104.8
B_CELL_NAIVE_85
103.9
B_CELL_NAIVE_86
99.9
B_CELL_NAIVE_87
99.4
B_CELL_NAIVE_88
99.0
B_CELL_NAIVE_89
97.3
B_CELL_NAIVE_90
96.7
B_CELL_NAIVE_91
95.9
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