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BETA
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  • CCAR1
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:17.4 nTPM
Monaco:132.2 nTPM
Schmiedel:126.3 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

17.4
HPA sample nTPM
Memory B-cell
nTPM: 14.3
Samples: 6

Max nTPM: 27.6
Min nTPM: 8.5
P10809_1017 11.3
P10809_1025 13.4
P10809_1044 27.6
P10809_1063 10.9
P10809_1092 14.1
P10809_1105 8.5
Naive B-cell
nTPM: 17.4
Samples: 6

Max nTPM: 62.2
Min nTPM: 6.1
P10809_1011 6.1
P10809_1029 11.8
P10809_1048 62.2
P10809_1067 7.4
P10809_1091 7.8
P10809_1104 9.1

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

132.2
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 61.3
Samples: 4

Max nTPM: 68.5
Min nTPM: 54.4
RHH5310_R3677 64.5
RHH5218_R3590 68.5
RHH5247_R3619 54.4
RHH5276_R3648 57.7
Naive B-cell
nTPM: 76.4
Samples: 4

Max nTPM: 86.8
Min nTPM: 62.1
RHH5308_R3675 62.1
RHH5216_R3588 76.6
RHH5245_R3617 80.2
RHH5274_R3646 86.8
Non-switched memory B-cell
nTPM: 69.1
Samples: 4

Max nTPM: 92.2
Min nTPM: 51.5
RHH5309_R3676 51.5
RHH5217_R3589 79.0
RHH5246_R3618 53.5
RHH5275_R3647 92.2
Plasmablast
nTPM: 132.2
Samples: 4

Max nTPM: 163.4
Min nTPM: 112.9
RHH5312_R3679 163.4
RHH5220_R3592 112.9
RHH5249_R3621 128.5
RHH5278_R3650 124.0
Switched memory B-cell
nTPM: 55.4
Samples: 4

Max nTPM: 82.4
Min nTPM: 39.3
RHH5311_R3678 39.3
RHH5219_R3591 52.1
RHH5248_R3620 47.8
RHH5277_R3649 82.4

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

126.3
Schmiedel sample id TPM
Naive B-cell
TPM: 126.3
Samples: 91

Max TPM: 183.0
Min TPM: 95.9
B_CELL_NAIVE_1 183.0
B_CELL_NAIVE_2 175.9
B_CELL_NAIVE_3 172.5
B_CELL_NAIVE_4 168.3
B_CELL_NAIVE_5 163.6
B_CELL_NAIVE_6 161.7
B_CELL_NAIVE_7 160.8
B_CELL_NAIVE_8 154.9
B_CELL_NAIVE_9 149.9
B_CELL_NAIVE_10 148.2
B_CELL_NAIVE_11 145.4
B_CELL_NAIVE_12 144.7
B_CELL_NAIVE_13 142.7
B_CELL_NAIVE_14 141.9
B_CELL_NAIVE_15 138.1
B_CELL_NAIVE_16 137.8
B_CELL_NAIVE_17 137.3
B_CELL_NAIVE_18 136.9
B_CELL_NAIVE_19 136.6
B_CELL_NAIVE_20 135.2
B_CELL_NAIVE_21 134.4
B_CELL_NAIVE_22 134.2
B_CELL_NAIVE_23 134.1
B_CELL_NAIVE_24 132.5
B_CELL_NAIVE_25 132.1
B_CELL_NAIVE_26 132.1
B_CELL_NAIVE_27 132.0
B_CELL_NAIVE_28 131.5
B_CELL_NAIVE_29 131.4
B_CELL_NAIVE_30 131.2
B_CELL_NAIVE_31 130.7
B_CELL_NAIVE_32 130.6
B_CELL_NAIVE_33 129.8
B_CELL_NAIVE_34 129.7
B_CELL_NAIVE_35 129.6
B_CELL_NAIVE_36 129.5
B_CELL_NAIVE_37 129.5
B_CELL_NAIVE_38 128.4
B_CELL_NAIVE_39 128.1
B_CELL_NAIVE_40 127.8
B_CELL_NAIVE_41 127.6
B_CELL_NAIVE_42 127.3
B_CELL_NAIVE_43 126.4
B_CELL_NAIVE_44 125.6
B_CELL_NAIVE_45 125.6
B_CELL_NAIVE_46 125.4
B_CELL_NAIVE_47 125.0
B_CELL_NAIVE_48 124.9
B_CELL_NAIVE_49 124.9
B_CELL_NAIVE_50 124.6
B_CELL_NAIVE_51 124.4
B_CELL_NAIVE_52 123.1
B_CELL_NAIVE_53 123.0
B_CELL_NAIVE_54 121.4
B_CELL_NAIVE_55 121.4
B_CELL_NAIVE_56 121.0
B_CELL_NAIVE_57 120.2
B_CELL_NAIVE_58 119.9
B_CELL_NAIVE_59 119.4
B_CELL_NAIVE_60 118.8
B_CELL_NAIVE_61 117.3
B_CELL_NAIVE_62 117.2
B_CELL_NAIVE_63 116.6
B_CELL_NAIVE_64 116.2
B_CELL_NAIVE_65 115.8
B_CELL_NAIVE_66 115.0
B_CELL_NAIVE_67 114.7
B_CELL_NAIVE_68 114.4
B_CELL_NAIVE_69 113.8
B_CELL_NAIVE_70 112.9
B_CELL_NAIVE_71 112.9
B_CELL_NAIVE_72 112.7
B_CELL_NAIVE_73 112.6
B_CELL_NAIVE_74 111.3
B_CELL_NAIVE_75 110.6
B_CELL_NAIVE_76 110.1
B_CELL_NAIVE_77 109.3
B_CELL_NAIVE_78 108.1
B_CELL_NAIVE_79 107.1
B_CELL_NAIVE_80 106.0
B_CELL_NAIVE_81 105.7
B_CELL_NAIVE_82 105.5
B_CELL_NAIVE_83 105.2
B_CELL_NAIVE_84 104.8
B_CELL_NAIVE_85 103.9
B_CELL_NAIVE_86 99.9
B_CELL_NAIVE_87 99.4
B_CELL_NAIVE_88 99.0
B_CELL_NAIVE_89 97.3
B_CELL_NAIVE_90 96.7
B_CELL_NAIVE_91 95.9
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