A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.6
nTPM
Monaco:
101.1
nTPM
Schmiedel:
76.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.6
HPA sample
nTPM
Classical monocyte nTPM: 14.6
Samples: 6
Max nTPM: 22.6
Min nTPM: 10.0
P10809_1003
16.0
P10809_1020
14.0
P10809_1039
22.6
P10809_1058
10.0
P10809_1080
13.8
P10809_1107
11.0
Intermediate monocyte nTPM: 13.0
Samples: 6
Max nTPM: 20.0
Min nTPM: 7.5
P10809_1004
16.4
P10809_1023
11.8
P10809_1042
20.0
P10809_1061
14.5
P10809_1081
7.7
P10809_1108
7.5
Non-classical monocyte nTPM: 15.6
Samples: 5
Max nTPM: 23.7
Min nTPM: 8.1
P10809_1005
15.3
P10809_1053
22.1
P10809_1072
23.7
P10809_1082
9.0
P10809_1109
8.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.1
Monaco sample
nTPM
Classical monocyte nTPM: 101.1
Samples: 4
Max nTPM: 140.0
Min nTPM: 77.5
RHH5313_R3680
90.8
RHH5221_R3593
140.0
RHH5250_R3622
96.1
RHH5279_R3651
77.5
Intermediate monocyte nTPM: 85.4
Samples: 4
Max nTPM: 94.9
Min nTPM: 70.7
RHH5314_R3681
83.4
RHH5222_R3594
92.6
RHH5251_R3623
94.9
RHH5280_R3652
70.7
Non-classical monocyte nTPM: 79.7
Samples: 4
Max nTPM: 100.2
Min nTPM: 61.4
RHH5315_R3682
100.2
RHH5223_R3595
68.5
RHH5252_R3624
88.8
RHH5281_R3653
61.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.8
Schmiedel sample id
TPM
Classical monocyte TPM: 55.1
Samples: 91
Max TPM: 69.2
Min TPM: 43.1
MONOCYTES_1
69.2
MONOCYTES_2
67.2
MONOCYTES_3
67.0
MONOCYTES_4
66.7
MONOCYTES_5
65.7
MONOCYTES_6
65.5
MONOCYTES_7
65.3
MONOCYTES_8
65.2
MONOCYTES_9
65.0
MONOCYTES_10
64.5
MONOCYTES_11
64.2
MONOCYTES_12
63.7
MONOCYTES_13
63.1
MONOCYTES_14
62.2
MONOCYTES_15
62.2
MONOCYTES_16
61.7
MONOCYTES_17
61.5
MONOCYTES_18
61.5
MONOCYTES_19
60.7
MONOCYTES_20
60.6
MONOCYTES_21
60.5
MONOCYTES_22
60.4
MONOCYTES_23
60.2
MONOCYTES_24
59.3
MONOCYTES_25
59.3
MONOCYTES_26
58.3
MONOCYTES_27
58.0
MONOCYTES_28
57.8
MONOCYTES_29
57.6
MONOCYTES_30
57.5
MONOCYTES_31
57.4
MONOCYTES_32
57.1
MONOCYTES_33
57.0
MONOCYTES_34
56.8
MONOCYTES_35
56.5
MONOCYTES_36
56.1
MONOCYTES_37
55.8
MONOCYTES_38
55.3
MONOCYTES_39
55.0
MONOCYTES_40
54.8
MONOCYTES_41
54.8
MONOCYTES_42
54.5
MONOCYTES_43
54.4
MONOCYTES_44
54.4
MONOCYTES_45
54.2
MONOCYTES_46
54.1
MONOCYTES_47
54.1
MONOCYTES_48
54.0
MONOCYTES_49
54.0
MONOCYTES_50
53.9
MONOCYTES_51
53.3
MONOCYTES_52
53.3
MONOCYTES_53
53.3
MONOCYTES_54
53.1
MONOCYTES_55
52.9
MONOCYTES_56
52.7
MONOCYTES_57
52.4
MONOCYTES_58
52.3
MONOCYTES_59
52.3
MONOCYTES_60
52.3
MONOCYTES_61
51.5
MONOCYTES_62
51.3
MONOCYTES_63
51.0
MONOCYTES_64
50.8
MONOCYTES_65
50.7
MONOCYTES_66
50.7
MONOCYTES_67
50.7
MONOCYTES_68
50.7
MONOCYTES_69
50.5
MONOCYTES_70
50.3
MONOCYTES_71
50.0
MONOCYTES_72
50.0
MONOCYTES_73
49.7
MONOCYTES_74
49.5
MONOCYTES_75
49.4
MONOCYTES_76
49.2
MONOCYTES_77
49.0
MONOCYTES_78
48.9
MONOCYTES_79
48.8
MONOCYTES_80
48.7
MONOCYTES_81
48.6
MONOCYTES_82
48.6
MONOCYTES_83
48.5
MONOCYTES_84
48.4
MONOCYTES_85
47.9
MONOCYTES_86
46.9
MONOCYTES_87
46.4
MONOCYTES_88
45.7
MONOCYTES_89
44.1
MONOCYTES_90
44.0
MONOCYTES_91
43.1
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Non-classical monocyte TPM: 76.8
Samples: 90
Max TPM: 105.5
Min TPM: 57.2
M2_1
105.5
M2_2
103.1
M2_3
101.9
M2_4
101.3
M2_5
97.6
M2_6
95.1
M2_7
94.5
M2_8
93.8
M2_9
93.7
M2_10
93.5
M2_11
92.4
M2_12
92.2
M2_13
91.2
M2_14
91.1
M2_15
89.5
M2_16
88.8
M2_17
86.5
M2_18
86.0
M2_19
85.0
M2_20
84.9
M2_21
84.5
M2_22
84.5
M2_23
83.9
M2_24
82.9
M2_25
81.9
M2_26
81.8
M2_27
80.4
M2_28
79.4
M2_29
79.3
M2_30
79.2
M2_31
79.1
M2_32
79.0
M2_33
79.0
M2_34
78.7
M2_35
78.5
M2_36
77.9
M2_37
77.9
M2_38
77.6
M2_39
76.9
M2_40
76.4
M2_41
75.7
M2_42
75.7
M2_43
75.5
M2_44
74.7
M2_45
74.5
M2_46
74.1
M2_47
73.9
M2_48
73.5
M2_49
73.4
M2_50
73.1
M2_51
72.6
M2_52
72.5
M2_53
72.1
M2_54
72.0
M2_55
71.8
M2_56
71.5
M2_57
71.4
M2_58
71.3
M2_59
71.1
M2_60
71.1
M2_61
70.9
M2_62
70.7
M2_63
70.6
M2_64
70.5
M2_65
70.3
M2_66
70.3
M2_67
70.1
M2_68
69.8
M2_69
69.7
M2_70
69.5
M2_71
69.3
M2_72
69.2
M2_73
68.7
M2_74
67.4
M2_75
67.3
M2_76
67.0
M2_77
66.8
M2_78
66.6
M2_79
65.8
M2_80
64.9
M2_81
63.3
M2_82
63.3
M2_83
63.3
M2_84
61.3
M2_85
60.8
M2_86
60.8
M2_87
59.9
M2_88
59.6
M2_89
58.5
M2_90
57.2
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