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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:23.3 nTPM
HPA Brain:29.8 nTPM
GTEx:23.3 nTPM
FANTOM5:35.4 Scaled Tags Per Million
Pig:20.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 25.2
2565 Male, age 75, midline 28.0
2816 Male, age 47, midline 28.0
2194 Female, age 79, both hemispheres 27.1
1981 Female, age 72, midline 21.9
2048 Male, age 55, midline 21.1
Cervical spinal cord, dorsal horn
nTPM: 29.8
2297 Male, age 75, both hemispheres 48.0
2721 Male, age 90, both hemispheres 36.2
1877 Male, age 55, unknown 29.0
2069 Male, age 47, both hemispheres 27.1
2296 Male, age 66, both hemispheres 20.8
2173 Female, age 72, unknown 17.8
Cervical spinal cord, ventral horn
nTPM: 25.4
2820 Female, age 79, both hemispheres 28.5
2068 Male, age 55, unknown 27.0
2809 Male, age 90, both hemispheres 26.8
2295 Male, age 66, both hemispheres 24.0
2098 Female, age 72, unknown 23.5
2480 Male, age 75, both hemispheres 22.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 23.3
Samples: 204

Max nTPM: 58.0
Min nTPM: 12.0
Std nTPM: 7.2
Median nTPM: 21.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 58.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 57.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 46.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 45.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 43.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 39.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 37.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 37.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 36.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 36.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 36.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 35.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 34.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 34.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 34.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 33.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 33.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 33.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 33.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 32.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 32.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 32.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 32.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 31.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 31.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 31.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 31.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 31.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 30.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 30.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 30.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 29.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 29.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 28.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 28.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 28.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 28.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 28.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 28.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 28.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 27.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 27.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 27.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 27.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 27.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 27.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 27.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 26.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 26.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 26.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 26.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 26.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 26.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 26.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 26.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 26.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 26.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 26.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 26.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 26.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 25.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 25.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 25.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 25.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 25.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 25.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 25.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 24.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 24.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 24.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 24.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 24.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 24.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 24.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 24.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 24.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 23.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 23.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 23.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 23.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 23.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 23.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 23.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 23.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 22.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 22.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 22.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 22.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 22.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 22.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 22.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 22.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 22.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 22.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 22.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 22.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 22.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 22.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 22.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 22.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 21.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 21.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 21.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 21.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 21.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 21.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 21.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 21.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 21.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 21.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 21.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 21.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 21.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 21.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 20.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 20.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 20.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 20.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 20.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 20.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 20.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 20.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 20.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 20.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 20.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 20.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 19.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 19.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 19.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 19.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 19.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 19.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 19.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 19.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 19.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 19.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 19.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 19.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 19.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 19.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 18.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 18.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 18.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 18.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 18.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 18.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 18.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 18.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 18.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 18.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 18.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 18.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 18.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 18.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 18.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 17.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 17.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 17.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 17.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 17.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 17.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 17.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 17.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 17.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 17.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 17.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 17.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 17.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 17.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 17.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 17.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 17.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 17.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 17.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 17.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 17.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 16.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 16.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 16.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 16.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 16.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 16.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 16.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 15.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 15.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 15.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 15.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 15.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 15.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 15.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 15.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 15.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 15.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 15.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 15.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 15.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 14.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 14.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 14.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 13.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 13.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 13.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 13.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 12.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

35.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 35.4
FF:10181-103D1 60 years, female 40.8
FF:10159-103A6 76 years, female 30.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 17.6
Samples: 4

Max nTPM: 20.4
Min nTPM: 15.6
Sample A Female 18.5
Sample B Female 15.6
Sample C Male 16.0
Sample D Male 20.4
Ventral spinal cord
nTPM: 20.8
Samples: 4

Max nTPM: 24.1
Min nTPM: 19.1
Sample A Female 20.0
Sample B Female 24.1
Sample C Male 19.1
Sample D Male 20.1

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