On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
172.2
nTPM
HPA Brain:
92.5
nTPM
GTEx:
172.2
nTPM
FANTOM5:
259.7
Scaled Tags Per Million
Macaque:
61.6
nTPM
Mouse:
126.9
nTPM
Pig:
203.0
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 66.2
1870
Female, age 42, unknown
91.4
2019
Male, age 18, unknown
89.6
1830
Male, age 51, unknown
73.7
1833
Male, age 53, unknown
70.6
2411
Female, age 72, unknown
69.1
2586
Male, age 75, left hemisphere
65.7
2828
Female, age 72, unknown
57.0
1827
Male, age 72, unknown
54.7
2219
Male, age 76, both hemispheres
46.0
2666
Male, age 74, left hemisphere
43.9
Dorsal raphe nucleus nTPM: 67.1
1828
Male, age 53, unknown
84.1
2750
Male, age 76, both hemispheres
69.2
2016
Female, age 72, unknown
68.1
2298
Female, age 72, unknown
57.5
2047
Male, age 72, unknown
56.5
Inferior colliculus nTPM: 70.7
1890
Male, age 53, unknown
83.2
2097
Female, age 72, unknown
73.1
1848
Female, age 42, unknown
72.3
2849
Male, age 72, unknown
54.1
Median raphe nucleus nTPM: 51.3
2220
Male, age 76, midline
51.3
Periaquaductal grey, anterior nTPM: 53.9
1947
Male, age 18, unknown
58.7
2502
Female, age 75, unknown
58.3
1795
Male, age 51, unknown
44.8
Periaquaductal grey, dorsal nTPM: 53.7
2850
Male, age 76, both hemispheres
61.2
2464
Female, age 72, unknown
56.4
1831
Male, age 72, unknown
50.8
1840
Male, age 53, unknown
46.4
Periaquaductal grey, lateral nTPM: 55.5
2272
Male, age 74, both hemispheres
57.1
2140
Male, age 76, both hemispheres
56.0
2053
Male, age 18, unknown
53.5
Pretectal area nTPM: 62.9
2007
Male, age 72, unknown
78.0
1817
Female, age 42, unknown
75.0
2273
Male, age 74, both hemispheres
68.6
2224
Female, age 72, unknown
66.5
2667
Female, age 75, unknown
63.8
1815
Male, age 53, unknown
62.3
2316
Male, age 76, right hemisphere
59.0
2407
Male, age 75, both hemispheres
58.2
1944
Female, age 72, unknown
54.4
1816
Male, age 51, unknown
53.0
2825
Male, age 18, unknown
52.7
Red nucleus nTPM: 92.5
1821
Female, age 72, unknown
131.0
2823
Male, age 76, right hemisphere
115.9
1865
Male, age 51, unknown
110.6
1954
Female, age 42, unknown
103.3
1904
Male, age 53, unknown
98.8
2769
Male, age 72, unknown
96.1
2227
Male, age 72, unknown
94.2
2503
Female, age 72, unknown
89.4
2785
Male, age 18, unknown
81.5
2725
Female, age 75, unknown
73.1
2588
Male, age 74, left hemisphere
63.1
2584
Male, age 75, left hemisphere
52.7
Substantia nigra nTPM: 65.8
1889
Female, age 72, unknown
83.8
2241
Male, age 72, unknown
74.8
1851
Male, age 51, unknown
72.4
2699
Male, age 18, unknown
69.3
2409
Female, age 72, unknown
66.3
1916
Female, age 42, unknown
65.3
1941
Male, age 53, unknown
62.4
2583
Male, age 75, right hemisphere
61.6
2590
Female, age 75, unknown
61.1
2665
Male, age 74, both hemispheres
41.5
Superior colliculus nTPM: 64.1
2587
Male, age 74, left hemisphere
75.3
1913
Female, age 42, unknown
74.6
2668
Female, age 75, unknown
74.4
1995
Male, age 72, unknown
73.5
1895
Male, age 76, right hemisphere
70.2
1839
Male, age 51, unknown
59.8
2664
Male, age 75, both hemispheres
58.6
2087
Female, age 72, unknown
52.9
2261
Male, age 18, unknown
52.6
1796
Male, age 53, unknown
49.3
Ventral tegmental area nTPM: 62.3
2410
Female, age 72, unknown
75.7
2223
Female, age 72, unknown
73.8
1915
Female, age 42, unknown
61.1
1942
Male, age 51, unknown
58.2
2218
Male, age 76, both hemispheres
53.2
2021
Male, age 53, unknown
52.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
172.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 172.2
Samples: 183
Max nTPM: 335.8
Min nTPM: 83.7
Std nTPM: 45.8
Median nTPM: 167.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
335.8
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
318.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
277.8
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
273.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
271.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
266.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
259.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
259.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
254.9
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
250.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
250.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
248.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
246.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
245.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
244.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
238.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
236.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
235.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
233.4
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
231.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
230.2
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
230.0
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
229.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
227.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
226.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
226.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
224.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
222.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
222.7
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
220.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
218.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
216.9
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
215.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
212.6
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
212.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
211.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
211.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
209.4
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
205.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
205.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
204.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
204.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
204.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
202.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
201.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
200.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
199.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
198.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
197.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
197.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
197.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
195.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
194.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
194.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
194.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
193.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
193.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
187.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
187.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
187.8
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
187.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
186.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
185.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
185.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
184.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
183.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
183.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
183.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
183.0
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
182.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
182.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
181.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
181.5
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
181.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
178.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
177.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
177.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
175.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
174.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
174.3
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
174.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
173.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
173.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
172.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
171.8
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
171.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
170.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
168.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
168.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
168.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
168.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
167.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
167.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
166.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
165.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
163.7
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
163.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
163.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
162.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
162.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
162.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
162.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
162.3
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
161.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
160.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
159.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
159.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
159.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
159.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
157.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
155.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
154.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
151.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
150.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
149.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
149.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
149.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
149.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
148.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
148.7
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
147.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
146.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
145.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
145.1
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
144.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
144.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
143.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
142.7
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
142.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
142.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
142.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
142.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
142.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
141.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
140.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
140.5
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
139.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
139.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
139.1
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
138.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
138.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
136.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
136.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
135.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
134.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
134.4
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
134.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
131.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
129.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
128.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
128.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
127.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
125.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
125.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
125.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
124.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
124.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
123.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
123.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
123.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
123.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
123.3
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
121.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
120.9
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
119.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
116.2
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
115.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
115.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
113.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
113.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
112.9
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
111.3
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
110.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
110.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
106.1
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
101.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
100.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
96.2
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
96.2
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
89.0
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
86.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
85.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
83.7
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
61.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 51.1
Samples: 1
Max nTPM: 51.1
Min nTPM: 51.1
Sample A
51.1
Midbrain nTPM: 45.5
Samples: 1
Max nTPM: 45.5
Min nTPM: 45.5
Sample A
45.5
Superior colliculi nTPM: 61.6
Samples: 1
Max nTPM: 61.6
Min nTPM: 61.6
Sample A
61.6
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
203.0
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 179.6
Samples: 3
Max nTPM: 235.3
Min nTPM: 139.4
Sample A
Female
235.3
Sample B
Female
164.2
Sample C
Male
139.4
Midbrain nTPM: 157.8
Samples: 3
Max nTPM: 180.4
Min nTPM: 134.7
Sample B
Female
180.4
Sample C
Male
158.2
Sample D
Male
134.7
Periaqueductal gray nTPM: 132.4
Samples: 3
Max nTPM: 143.5
Min nTPM: 123.3
Sample B
Female
143.5
Sample C
Male
123.3
Sample D
Male
130.5
Superior colliculi nTPM: 203.0
Samples: 4
Max nTPM: 243.3
Min nTPM: 178.3
Sample A
Female
243.3
Sample B
Female
188.6
Sample C
Male
201.8
Sample D
Male
178.3
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
126.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 126.9
Samples: 4
Max nTPM: 133.6
Min nTPM: 119.9
Sample A
133.6
Sample B
125.9
Sample C
119.9
Sample D
128.2
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
