MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.6 nTPM
HPA Brain:43.7 nTPM
GTEx:62.6 nTPM
FANTOM5:60.2 Scaled Tags Per Million
Pig:10.0 nTPM
Mouse:0.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.6
2828 Female, age 72, unknown 46.8
2019 Male, age 18, unknown 45.0
2411 Female, age 72, unknown 44.3
1870 Female, age 42, unknown 41.4
2586 Male, age 75, left hemisphere 39.7
1830 Male, age 51, unknown 38.1
1833 Male, age 53, unknown 37.6
1827 Male, age 72, unknown 36.6
2219 Male, age 76, both hemispheres 35.0
2666 Male, age 74, left hemisphere 32.0
Dorsal raphe nucleus
nTPM: 41.0
1828 Male, age 53, unknown 45.2
2750 Male, age 76, both hemispheres 41.7
2298 Female, age 72, unknown 40.8
2016 Female, age 72, unknown 39.9
2047 Male, age 72, unknown 37.3
Inferior colliculus
nTPM: 35.8
2097 Female, age 72, unknown 38.2
1848 Female, age 42, unknown 36.7
1890 Male, age 53, unknown 35.9
2849 Male, age 72, unknown 32.7
Median raphe nucleus
nTPM: 32.5
2220 Male, age 76, midline 32.5
Periaquaductal grey, anterior
nTPM: 34.8
2502 Female, age 75, unknown 39.3
1795 Male, age 51, unknown 33.5
1947 Male, age 18, unknown 31.7
Periaquaductal grey, dorsal
nTPM: 32.9
2850 Male, age 76, both hemispheres 35.1
2464 Female, age 72, unknown 34.1
1840 Male, age 53, unknown 32.2
1831 Male, age 72, unknown 30.3
Periaquaductal grey, lateral
nTPM: 33.7
2140 Male, age 76, both hemispheres 36.3
2272 Male, age 74, both hemispheres 33.2
2053 Male, age 18, unknown 31.6
Pretectal area
nTPM: 37.3
1817 Female, age 42, unknown 41.9
2007 Male, age 72, unknown 41.4
2316 Male, age 76, right hemisphere 41.4
2273 Male, age 74, both hemispheres 39.7
2667 Female, age 75, unknown 39.2
1815 Male, age 53, unknown 38.8
1944 Female, age 72, unknown 38.6
1816 Male, age 51, unknown 35.2
2224 Female, age 72, unknown 33.7
2825 Male, age 18, unknown 31.8
2407 Male, age 75, both hemispheres 29.2
Red nucleus
nTPM: 43.7
2503 Female, age 72, unknown 52.2
1904 Male, age 53, unknown 49.1
2769 Male, age 72, unknown 48.3
1821 Female, age 72, unknown 47.2
2785 Male, age 18, unknown 47.0
2227 Male, age 72, unknown 46.5
1865 Male, age 51, unknown 44.8
2823 Male, age 76, right hemisphere 44.2
1954 Female, age 42, unknown 43.3
2725 Female, age 75, unknown 38.5
2588 Male, age 74, left hemisphere 36.5
2584 Male, age 75, left hemisphere 26.8
Substantia nigra
nTPM: 43.7
1916 Female, age 42, unknown 61.9
1851 Male, age 51, unknown 53.7
2699 Male, age 18, unknown 51.5
2241 Male, age 72, unknown 42.9
2409 Female, age 72, unknown 42.6
1941 Male, age 53, unknown 41.2
1889 Female, age 72, unknown 40.3
2590 Female, age 75, unknown 37.1
2665 Male, age 74, both hemispheres 35.1
2583 Male, age 75, right hemisphere 30.3
Superior colliculus
nTPM: 37.6
2668 Female, age 75, unknown 40.6
1913 Female, age 42, unknown 40.0
1995 Male, age 72, unknown 38.9
1796 Male, age 53, unknown 38.7
2087 Female, age 72, unknown 37.7
2587 Male, age 74, left hemisphere 37.6
1895 Male, age 76, right hemisphere 37.3
1839 Male, age 51, unknown 35.7
2664 Male, age 75, both hemispheres 35.2
2261 Male, age 18, unknown 34.0
Ventral tegmental area
nTPM: 43.1
2410 Female, age 72, unknown 52.5
1915 Female, age 42, unknown 52.2
2223 Female, age 72, unknown 42.2
1942 Male, age 51, unknown 38.7
2218 Male, age 76, both hemispheres 38.3
2021 Male, age 53, unknown 34.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 62.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.6
Samples: 183

Max nTPM: 223.4
Min nTPM: 28.3
Std nTPM: 20.8
Median nTPM: 59.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 223.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 132.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 121.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 119.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 116.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 114.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 104.6
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 104.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 100.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 100.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 98.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.2
FF:10158-103A5 76 years, female 60.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.0
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.0
Sample A Female 10.7
Sample B Female 9.1
Sample C Male 11.1
Sample D Male 9.0
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.2
Sample A Female 11.1
Sample B Female 10.4
Sample C Male 10.3
Sample D Male 8.2
Periaqueductal gray
nTPM: 9.6
Samples: 3

Max nTPM: 11.2
Min nTPM: 8.3
Sample B Female 9.3
Sample C Male 11.2
Sample D Male 8.3
Superior colliculi
nTPM: 9.9
Samples: 4

Max nTPM: 11.2
Min nTPM: 8.5
Sample A Female 9.7
Sample B Female 11.2
Sample C Male 10.3
Sample D Male 8.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Male 0.5
Sample B Male 0.3
Sample C Female 0.3
Sample D Female 0.2

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