MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.7 nTPM
HPA Brain:94.2 nTPM
GTEx:38.7 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:89.7 nTPM
Mouse:212.3 nTPM
Allen mouse:14.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 94.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.2
2586 Male, age 75, left hemisphere 83.6
2666 Male, age 74, left hemisphere 80.3
2019 Male, age 18, unknown 78.9
1827 Male, age 72, unknown 78.0
2411 Female, age 72, unknown 71.9
2219 Male, age 76, both hemispheres 71.8
1870 Female, age 42, unknown 64.6
2828 Female, age 72, unknown 62.7
1833 Male, age 53, unknown 62.2
1830 Male, age 51, unknown 58.1
Dorsal raphe nucleus
nTPM: 76.3
2298 Female, age 72, unknown 87.5
2047 Male, age 72, unknown 81.2
1828 Male, age 53, unknown 79.2
2750 Male, age 76, both hemispheres 68.9
2016 Female, age 72, unknown 64.5
Inferior colliculus
nTPM: 72.9
2097 Female, age 72, unknown 92.5
1890 Male, age 53, unknown 75.0
1848 Female, age 42, unknown 66.7
2849 Male, age 72, unknown 57.6
Median raphe nucleus
nTPM: 76.2
2220 Male, age 76, midline 76.2
Periaquaductal grey, anterior
nTPM: 79.8
1947 Male, age 18, unknown 81.8
2502 Female, age 75, unknown 79.0
1795 Male, age 51, unknown 78.4
Periaquaductal grey, dorsal
nTPM: 69.2
1840 Male, age 53, unknown 73.0
1831 Male, age 72, unknown 70.8
2850 Male, age 76, both hemispheres 67.7
2464 Female, age 72, unknown 65.2
Periaquaductal grey, lateral
nTPM: 63.0
2053 Male, age 18, unknown 63.5
2140 Male, age 76, both hemispheres 63.3
2272 Male, age 74, both hemispheres 62.2
Pretectal area
nTPM: 83.8
1816 Male, age 51, unknown 114.5
1944 Female, age 72, unknown 111.8
2007 Male, age 72, unknown 104.0
1817 Female, age 42, unknown 100.1
1815 Male, age 53, unknown 95.4
2273 Male, age 74, both hemispheres 74.3
2224 Female, age 72, unknown 74.0
2667 Female, age 75, unknown 72.1
2825 Male, age 18, unknown 61.6
2407 Male, age 75, both hemispheres 60.0
2316 Male, age 76, right hemisphere 54.4
Red nucleus
nTPM: 64.2
1821 Female, age 72, unknown 81.7
2785 Male, age 18, unknown 71.9
2725 Female, age 75, unknown 71.7
2584 Male, age 75, left hemisphere 69.1
1954 Female, age 42, unknown 62.7
2503 Female, age 72, unknown 62.5
1904 Male, age 53, unknown 61.1
1865 Male, age 51, unknown 60.4
2588 Male, age 74, left hemisphere 59.5
2769 Male, age 72, unknown 58.6
2227 Male, age 72, unknown 58.4
2823 Male, age 76, right hemisphere 52.9
Substantia nigra
nTPM: 94.2
1916 Female, age 42, unknown 128.6
2241 Male, age 72, unknown 109.1
1851 Male, age 51, unknown 102.6
1889 Female, age 72, unknown 98.9
2409 Female, age 72, unknown 95.1
1941 Male, age 53, unknown 91.8
2665 Male, age 74, both hemispheres 86.5
2583 Male, age 75, right hemisphere 79.3
2699 Male, age 18, unknown 77.7
2590 Female, age 75, unknown 72.9
Superior colliculus
nTPM: 74.1
2668 Female, age 75, unknown 94.4
2087 Female, age 72, unknown 91.5
2261 Male, age 18, unknown 88.6
1796 Male, age 53, unknown 81.2
2664 Male, age 75, both hemispheres 69.1
2587 Male, age 74, left hemisphere 67.5
1839 Male, age 51, unknown 63.4
1895 Male, age 76, right hemisphere 63.0
1913 Female, age 42, unknown 63.0
1995 Male, age 72, unknown 59.5
Ventral tegmental area
nTPM: 80.6
2410 Female, age 72, unknown 96.8
1915 Female, age 42, unknown 87.4
2218 Male, age 76, both hemispheres 84.2
1942 Male, age 51, unknown 77.4
2223 Female, age 72, unknown 74.0
2021 Male, age 53, unknown 64.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.7
Samples: 183

Max nTPM: 91.8
Min nTPM: 14.8
Std nTPM: 14.1
Median nTPM: 35.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 91.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 87.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 85.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 82.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 82.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 73.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 71.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 67.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 65.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 64.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 64.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.8
FF:10158-103A5 76 years, female 57.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 89.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 72.3
Samples: 4

Max nTPM: 92.1
Min nTPM: 52.7
Sample A Female 92.1
Sample B Female 67.3
Sample C Male 77.1
Sample D Male 52.7
Midbrain
nTPM: 89.6
Samples: 4

Max nTPM: 122.7
Min nTPM: 71.2
Sample A Female 71.2
Sample B Female 73.5
Sample C Male 122.7
Sample D Male 91.0
Periaqueductal gray
nTPM: 62.9
Samples: 3

Max nTPM: 69.9
Min nTPM: 57.0
Sample B Female 61.9
Sample C Male 69.9
Sample D Male 57.0
Superior colliculi
nTPM: 89.7
Samples: 4

Max nTPM: 105.8
Min nTPM: 79.8
Sample A Female 92.9
Sample B Female 79.8
Sample C Male 105.8
Sample D Male 80.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 212.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 212.3
Samples: 4

Max nTPM: 220.7
Min nTPM: 198.1
Sample A Male 198.1
Sample B Male 220.7
Sample C Female 219.9
Sample D Female 210.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.9
69782073 Antisense, RP_050505_02_C06, Mouse strain C57BL/6J (56 days, male) 14.9

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