A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.2
nTPM
Monaco:
25.4
nTPM
Schmiedel:
73.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.2
HPA sample
nTPM
NK-cell nTPM: 3.2
Samples: 6
Max nTPM: 7.2
Min nTPM: 0.6
P10809_1013
3.8
P10809_1033
3.2
P10809_1052
2.8
P10809_1071
7.2
P10809_1093
0.6
P10809_1103
1.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.4
Monaco sample
nTPM
NK-cell nTPM: 25.5
Samples: 4
Max nTPM: 35.9
Min nTPM: 14.8
RHH5316_R3683
26.4
RHH5224_R3596
14.8
RHH5253_R3625
35.9
RHH5282_R3654
24.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.9
Schmiedel sample id
TPM
NK-cell TPM: 73.9
Samples: 90
Max TPM: 113.7
Min TPM: 45.8
NK_1
113.7
NK_2
108.2
NK_3
106.3
NK_4
102.9
NK_5
102.0
NK_6
99.4
NK_7
90.5
NK_8
89.9
NK_9
89.6
NK_10
89.0
NK_11
88.6
NK_12
88.4
NK_13
88.0
NK_14
87.2
NK_15
87.2
NK_16
86.0
NK_17
85.2
NK_18
85.0
NK_19
84.7
NK_20
83.9
NK_21
83.6
NK_22
82.7
NK_23
81.9
NK_24
81.7
NK_25
80.4
NK_26
80.4
NK_27
79.4
NK_28
78.8
NK_29
78.6
NK_30
78.5
NK_31
77.6
NK_32
77.3
NK_33
77.2
NK_34
77.0
NK_35
76.9
NK_36
76.6
NK_37
76.6
NK_38
76.0
NK_39
75.6
NK_40
74.8
NK_41
74.5
NK_42
73.0
NK_43
72.9
NK_44
71.3
NK_45
71.0
NK_46
70.5
NK_47
70.4
NK_48
70.2
NK_49
69.9
NK_50
69.8
NK_51
69.3
NK_52
69.2
NK_53
68.2
NK_54
68.2
NK_55
67.9
NK_56
67.8
NK_57
67.8
NK_58
67.1
NK_59
67.1
NK_60
66.6
NK_61
66.5
NK_62
66.4
NK_63
66.3
NK_64
65.9
NK_65
65.2
NK_66
65.1
NK_67
64.9
NK_68
64.9
NK_69
64.9
NK_70
64.7
NK_71
64.3
NK_72
63.8
NK_73
63.3
NK_74
63.3
NK_75
62.5
NK_76
61.8
NK_77
60.3
NK_78
60.1
NK_79
59.7
NK_80
59.7
NK_81
59.6
NK_82
58.9
NK_83
58.2
NK_84
58.0
NK_85
57.7
NK_86
57.5
NK_87
55.4
NK_88
55.2
NK_89
51.1
NK_90
45.8
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