MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.6 nTPM
HPA Brain:168.0 nTPM
GTEx:82.6 nTPM
FANTOM5:17.2 Scaled Tags Per Million
Pig:120.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 168.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 162.1
2666 Male, age 74, left hemisphere 190.7
2586 Male, age 75, left hemisphere 172.1
1870 Female, age 42, unknown 171.6
1833 Male, age 53, unknown 165.1
2411 Female, age 72, unknown 159.2
1827 Male, age 72, unknown 158.2
2019 Male, age 18, unknown 152.7
1830 Male, age 51, unknown 152.2
2219 Male, age 76, both hemispheres 150.9
2828 Female, age 72, unknown 148.3
Dorsal raphe nucleus
nTPM: 149.8
2016 Female, age 72, unknown 173.7
2298 Female, age 72, unknown 152.2
1828 Male, age 53, unknown 146.1
2047 Male, age 72, unknown 145.9
2750 Male, age 76, both hemispheres 131.0
Inferior colliculus
nTPM: 156.2
2849 Male, age 72, unknown 169.2
1848 Female, age 42, unknown 162.1
1890 Male, age 53, unknown 155.2
2097 Female, age 72, unknown 138.4
Median raphe nucleus
nTPM: 137.9
2220 Male, age 76, midline 137.9
Periaquaductal grey, anterior
nTPM: 153.4
2502 Female, age 75, unknown 164.5
1947 Male, age 18, unknown 157.8
1795 Male, age 51, unknown 137.9
Periaquaductal grey, dorsal
nTPM: 145.3
1840 Male, age 53, unknown 156.3
1831 Male, age 72, unknown 148.4
2464 Female, age 72, unknown 144.6
2850 Male, age 76, both hemispheres 132.0
Periaquaductal grey, lateral
nTPM: 139.9
2053 Male, age 18, unknown 157.0
2272 Male, age 74, both hemispheres 137.0
2140 Male, age 76, both hemispheres 125.6
Pretectal area
nTPM: 148.4
2407 Male, age 75, both hemispheres 169.4
1815 Male, age 53, unknown 168.3
2825 Male, age 18, unknown 160.1
1816 Male, age 51, unknown 156.7
1817 Female, age 42, unknown 153.5
2316 Male, age 76, right hemisphere 149.4
2007 Male, age 72, unknown 147.7
2224 Female, age 72, unknown 143.3
2667 Female, age 75, unknown 131.6
2273 Male, age 74, both hemispheres 131.4
1944 Female, age 72, unknown 120.7
Red nucleus
nTPM: 168.0
1821 Female, age 72, unknown 201.2
2503 Female, age 72, unknown 198.7
2584 Male, age 75, left hemisphere 183.6
2588 Male, age 74, left hemisphere 182.6
1865 Male, age 51, unknown 175.4
1904 Male, age 53, unknown 165.6
2725 Female, age 75, unknown 164.5
2769 Male, age 72, unknown 154.2
2227 Male, age 72, unknown 151.2
1954 Female, age 42, unknown 148.7
2785 Male, age 18, unknown 147.9
2823 Male, age 76, right hemisphere 142.7
Substantia nigra
nTPM: 159.8
2665 Male, age 74, both hemispheres 193.1
2590 Female, age 75, unknown 179.3
2241 Male, age 72, unknown 171.2
1851 Male, age 51, unknown 164.6
2409 Female, age 72, unknown 157.4
2699 Male, age 18, unknown 155.2
2583 Male, age 75, right hemisphere 154.8
1889 Female, age 72, unknown 150.3
1941 Male, age 53, unknown 140.4
1916 Female, age 42, unknown 131.3
Superior colliculus
nTPM: 157.5
2587 Male, age 74, left hemisphere 195.0
1913 Female, age 42, unknown 167.5
1839 Male, age 51, unknown 166.5
2664 Male, age 75, both hemispheres 165.4
1995 Male, age 72, unknown 163.2
1895 Male, age 76, right hemisphere 157.1
2261 Male, age 18, unknown 151.6
2668 Female, age 75, unknown 146.7
1796 Male, age 53, unknown 138.5
2087 Female, age 72, unknown 123.9
Ventral tegmental area
nTPM: 147.5
2223 Female, age 72, unknown 161.9
1915 Female, age 42, unknown 158.0
2021 Male, age 53, unknown 154.7
2410 Female, age 72, unknown 147.3
1942 Male, age 51, unknown 140.8
2218 Male, age 76, both hemispheres 122.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 82.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.6
Samples: 183

Max nTPM: 173.1
Min nTPM: 38.9
Std nTPM: 26.1
Median nTPM: 79.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 173.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 157.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 157.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 152.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 150.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 142.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 141.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 141.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 138.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 135.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 129.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.2
FF:10158-103A5 76 years, female 17.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 120.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 106.6
Samples: 4

Max nTPM: 115.3
Min nTPM: 100.1
Sample A Female 115.3
Sample B Female 102.9
Sample C Male 108.0
Sample D Male 100.1
Midbrain
nTPM: 115.0
Samples: 4

Max nTPM: 141.3
Min nTPM: 98.4
Sample A Female 141.3
Sample B Female 98.4
Sample C Male 117.9
Sample D Male 102.5
Periaqueductal gray
nTPM: 91.2
Samples: 3

Max nTPM: 98.8
Min nTPM: 82.7
Sample B Female 92.0
Sample C Male 98.8
Sample D Male 82.7
Superior colliculi
nTPM: 120.1
Samples: 4

Max nTPM: 123.6
Min nTPM: 114.8
Sample A Female 122.7
Sample B Female 123.6
Sample C Male 119.3
Sample D Male 114.8

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