A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
96.3
nTPM
Monaco:
417.8
nTPM
Schmiedel:
293.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.3
HPA sample
nTPM
Memory B-cell nTPM: 96.4
Samples: 6
Max nTPM: 148.1
Min nTPM: 52.8
P10809_1017
99.2
P10809_1025
99.9
P10809_1044
52.8
P10809_1063
90.3
P10809_1092
87.8
P10809_1105
148.1
Naive B-cell nTPM: 70.1
Samples: 6
Max nTPM: 83.7
Min nTPM: 57.3
P10809_1011
63.4
P10809_1029
74.3
P10809_1048
78.9
P10809_1067
57.3
P10809_1091
63.3
P10809_1104
83.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
417.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 309.7
Samples: 4
Max nTPM: 362.2
Min nTPM: 278.5
RHH5310_R3677
278.5
RHH5218_R3590
295.8
RHH5247_R3619
302.2
RHH5276_R3648
362.2
Naive B-cell nTPM: 314.9
Samples: 4
Max nTPM: 401.3
Min nTPM: 229.1
RHH5308_R3675
293.3
RHH5216_R3588
229.1
RHH5245_R3617
401.3
RHH5274_R3646
335.8
Non-switched memory B-cell nTPM: 327.9
Samples: 4
Max nTPM: 361.9
Min nTPM: 301.3
RHH5309_R3676
303.5
RHH5217_R3589
344.7
RHH5246_R3618
301.3
RHH5275_R3647
361.9
Plasmablast nTPM: 417.8
Samples: 4
Max nTPM: 499.4
Min nTPM: 313.7
RHH5312_R3679
499.4
RHH5220_R3592
313.7
RHH5249_R3621
424.2
RHH5278_R3650
433.7
Switched memory B-cell nTPM: 372.8
Samples: 4
Max nTPM: 506.7
Min nTPM: 295.7
RHH5311_R3678
295.7
RHH5219_R3591
315.0
RHH5248_R3620
506.7
RHH5277_R3649
373.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
293.4
Schmiedel sample id
TPM
Naive B-cell TPM: 293.4
Samples: 91
Max TPM: 435.5
Min TPM: 172.9
B_CELL_NAIVE_1
435.5
B_CELL_NAIVE_2
389.0
B_CELL_NAIVE_3
381.2
B_CELL_NAIVE_4
371.7
B_CELL_NAIVE_5
368.4
B_CELL_NAIVE_6
367.8
B_CELL_NAIVE_7
365.1
B_CELL_NAIVE_8
360.5
B_CELL_NAIVE_9
357.8
B_CELL_NAIVE_10
353.9
B_CELL_NAIVE_11
353.1
B_CELL_NAIVE_12
348.3
B_CELL_NAIVE_13
339.0
B_CELL_NAIVE_14
335.9
B_CELL_NAIVE_15
333.0
B_CELL_NAIVE_16
332.4
B_CELL_NAIVE_17
332.2
B_CELL_NAIVE_18
330.2
B_CELL_NAIVE_19
330.1
B_CELL_NAIVE_20
329.9
B_CELL_NAIVE_21
329.6
B_CELL_NAIVE_22
329.6
B_CELL_NAIVE_23
329.1
B_CELL_NAIVE_24
323.7
B_CELL_NAIVE_25
323.0
B_CELL_NAIVE_26
317.6
B_CELL_NAIVE_27
315.9
B_CELL_NAIVE_28
311.6
B_CELL_NAIVE_29
308.9
B_CELL_NAIVE_30
304.9
B_CELL_NAIVE_31
303.3
B_CELL_NAIVE_32
302.4
B_CELL_NAIVE_33
302.1
B_CELL_NAIVE_34
301.8
B_CELL_NAIVE_35
299.8
B_CELL_NAIVE_36
296.4
B_CELL_NAIVE_37
295.9
B_CELL_NAIVE_38
293.5
B_CELL_NAIVE_39
293.4
B_CELL_NAIVE_40
293.4
B_CELL_NAIVE_41
291.8
B_CELL_NAIVE_42
290.9
B_CELL_NAIVE_43
288.9
B_CELL_NAIVE_44
288.4
B_CELL_NAIVE_45
288.1
B_CELL_NAIVE_46
287.9
B_CELL_NAIVE_47
286.3
B_CELL_NAIVE_48
285.8
B_CELL_NAIVE_49
284.8
B_CELL_NAIVE_50
284.2
B_CELL_NAIVE_51
281.2
B_CELL_NAIVE_52
279.1
B_CELL_NAIVE_53
277.7
B_CELL_NAIVE_54
277.5
B_CELL_NAIVE_55
277.3
B_CELL_NAIVE_56
276.6
B_CELL_NAIVE_57
276.3
B_CELL_NAIVE_58
275.9
B_CELL_NAIVE_59
275.0
B_CELL_NAIVE_60
274.5
B_CELL_NAIVE_61
274.0
B_CELL_NAIVE_62
273.4
B_CELL_NAIVE_63
273.4
B_CELL_NAIVE_64
269.6
B_CELL_NAIVE_65
268.8
B_CELL_NAIVE_66
268.0
B_CELL_NAIVE_67
267.2
B_CELL_NAIVE_68
266.9
B_CELL_NAIVE_69
266.8
B_CELL_NAIVE_70
265.5
B_CELL_NAIVE_71
263.8
B_CELL_NAIVE_72
262.1
B_CELL_NAIVE_73
260.8
B_CELL_NAIVE_74
260.4
B_CELL_NAIVE_75
259.0
B_CELL_NAIVE_76
256.8
B_CELL_NAIVE_77
255.3
B_CELL_NAIVE_78
253.7
B_CELL_NAIVE_79
250.7
B_CELL_NAIVE_80
248.1
B_CELL_NAIVE_81
245.1
B_CELL_NAIVE_82
243.6
B_CELL_NAIVE_83
241.8
B_CELL_NAIVE_84
234.1
B_CELL_NAIVE_85
231.4
B_CELL_NAIVE_86
228.2
B_CELL_NAIVE_87
228.2
B_CELL_NAIVE_88
227.8
B_CELL_NAIVE_89
225.0
B_CELL_NAIVE_90
221.5
B_CELL_NAIVE_91
172.9
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