A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
98.4
nTPM
Monaco:
309.3
nTPM
Schmiedel:
278.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.4
HPA sample
nTPM
Classical monocyte nTPM: 76.2
Samples: 6
Max nTPM: 110.3
Min nTPM: 59.2
P10809_1003
110.3
P10809_1020
73.7
P10809_1039
66.6
P10809_1058
59.2
P10809_1080
64.6
P10809_1107
82.8
Intermediate monocyte nTPM: 78.9
Samples: 6
Max nTPM: 104.3
Min nTPM: 53.0
P10809_1004
73.2
P10809_1023
87.9
P10809_1042
55.1
P10809_1061
104.3
P10809_1081
53.0
P10809_1108
100.0
Non-classical monocyte nTPM: 98.4
Samples: 5
Max nTPM: 176.6
Min nTPM: 48.5
P10809_1005
80.1
P10809_1053
93.6
P10809_1072
176.6
P10809_1082
48.5
P10809_1109
93.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
309.3
Monaco sample
nTPM
Classical monocyte nTPM: 289.3
Samples: 4
Max nTPM: 426.6
Min nTPM: 200.9
RHH5313_R3680
246.0
RHH5221_R3593
200.9
RHH5250_R3622
426.6
RHH5279_R3651
283.7
Intermediate monocyte nTPM: 285.3
Samples: 4
Max nTPM: 388.0
Min nTPM: 217.0
RHH5314_R3681
257.2
RHH5222_R3594
217.0
RHH5251_R3623
388.0
RHH5280_R3652
278.9
Non-classical monocyte nTPM: 309.4
Samples: 4
Max nTPM: 410.5
Min nTPM: 210.5
RHH5315_R3682
304.5
RHH5223_R3595
210.5
RHH5252_R3624
410.5
RHH5281_R3653
311.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
278.5
Schmiedel sample id
TPM
Classical monocyte TPM: 217.0
Samples: 91
Max TPM: 292.4
Min TPM: 140.6
MONOCYTES_1
292.4
MONOCYTES_2
289.3
MONOCYTES_3
288.9
MONOCYTES_4
281.9
MONOCYTES_5
279.7
MONOCYTES_6
275.9
MONOCYTES_7
271.4
MONOCYTES_8
268.0
MONOCYTES_9
267.6
MONOCYTES_10
258.3
MONOCYTES_11
256.5
MONOCYTES_12
256.5
MONOCYTES_13
256.4
MONOCYTES_14
255.8
MONOCYTES_15
254.0
MONOCYTES_16
253.2
MONOCYTES_17
249.4
MONOCYTES_18
246.6
MONOCYTES_19
244.2
MONOCYTES_20
244.2
MONOCYTES_21
242.5
MONOCYTES_22
242.0
MONOCYTES_23
241.9
MONOCYTES_24
241.0
MONOCYTES_25
240.9
MONOCYTES_26
239.5
MONOCYTES_27
239.5
MONOCYTES_28
237.7
MONOCYTES_29
236.2
MONOCYTES_30
234.7
MONOCYTES_31
234.4
MONOCYTES_32
233.6
MONOCYTES_33
230.7
MONOCYTES_34
229.2
MONOCYTES_35
229.1
MONOCYTES_36
227.9
MONOCYTES_37
227.5
MONOCYTES_38
226.2
MONOCYTES_39
224.9
MONOCYTES_40
224.8
MONOCYTES_41
223.7
MONOCYTES_42
223.2
MONOCYTES_43
222.9
MONOCYTES_44
222.2
MONOCYTES_45
222.1
MONOCYTES_46
221.7
MONOCYTES_47
219.8
MONOCYTES_48
215.4
MONOCYTES_49
213.8
MONOCYTES_50
213.3
MONOCYTES_51
210.9
MONOCYTES_52
210.5
MONOCYTES_53
209.8
MONOCYTES_54
209.7
MONOCYTES_55
209.2
MONOCYTES_56
209.1
MONOCYTES_57
206.8
MONOCYTES_58
203.5
MONOCYTES_59
201.7
MONOCYTES_60
201.2
MONOCYTES_61
198.5
MONOCYTES_62
195.3
MONOCYTES_63
194.5
MONOCYTES_64
194.4
MONOCYTES_65
192.0
MONOCYTES_66
191.3
MONOCYTES_67
190.6
MONOCYTES_68
190.0
MONOCYTES_69
189.4
MONOCYTES_70
188.5
MONOCYTES_71
184.4
MONOCYTES_72
183.9
MONOCYTES_73
183.4
MONOCYTES_74
180.9
MONOCYTES_75
180.4
MONOCYTES_76
179.6
MONOCYTES_77
178.4
MONOCYTES_78
177.8
MONOCYTES_79
177.1
MONOCYTES_80
175.7
MONOCYTES_81
175.4
MONOCYTES_82
172.3
MONOCYTES_83
169.7
MONOCYTES_84
169.1
MONOCYTES_85
162.8
MONOCYTES_86
161.5
MONOCYTES_87
161.0
MONOCYTES_88
155.7
MONOCYTES_89
155.2
MONOCYTES_90
149.4
MONOCYTES_91
140.6
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Non-classical monocyte TPM: 278.5
Samples: 90
Max TPM: 409.9
Min TPM: 190.8
M2_1
409.9
M2_2
406.7
M2_3
384.6
M2_4
361.7
M2_5
357.3
M2_6
353.4
M2_7
350.0
M2_8
345.2
M2_9
342.0
M2_10
336.9
M2_11
331.0
M2_12
327.6
M2_13
326.2
M2_14
325.3
M2_15
320.2
M2_16
319.9
M2_17
317.1
M2_18
314.5
M2_19
313.4
M2_20
309.0
M2_21
309.0
M2_22
308.6
M2_23
308.1
M2_24
307.1
M2_25
305.5
M2_26
304.5
M2_27
297.3
M2_28
294.5
M2_29
293.5
M2_30
293.3
M2_31
292.9
M2_32
292.6
M2_33
292.1
M2_34
290.9
M2_35
289.3
M2_36
285.2
M2_37
283.3
M2_38
282.4
M2_39
281.9
M2_40
280.8
M2_41
278.3
M2_42
276.0
M2_43
274.6
M2_44
273.5
M2_45
273.3
M2_46
271.6
M2_47
270.2
M2_48
269.1
M2_49
267.7
M2_50
267.1
M2_51
265.1
M2_52
264.9
M2_53
263.4
M2_54
262.1
M2_55
261.6
M2_56
260.8
M2_57
260.2
M2_58
260.2
M2_59
259.5
M2_60
259.3
M2_61
255.7
M2_62
255.4
M2_63
255.1
M2_64
253.7
M2_65
252.4
M2_66
251.4
M2_67
248.7
M2_68
247.8
M2_69
245.9
M2_70
245.7
M2_71
245.5
M2_72
244.4
M2_73
242.1
M2_74
241.3
M2_75
236.4
M2_76
235.7
M2_77
235.6
M2_78
230.1
M2_79
227.5
M2_80
222.5
M2_81
221.5
M2_82
221.3
M2_83
220.0
M2_84
216.8
M2_85
213.0
M2_86
212.9
M2_87
204.9
M2_88
204.0
M2_89
203.2
M2_90
190.8
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