A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.4
nTPM
Monaco:
90.9
nTPM
Schmiedel:
28.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.4
HPA sample
nTPM
Memory B-cell nTPM: 9.7
Samples: 6
Max nTPM: 15.2
Min nTPM: 0.6
P10809_1017
12.3
P10809_1025
15.2
P10809_1044
0.6
P10809_1063
10.5
P10809_1092
8.6
P10809_1105
11.2
Naive B-cell nTPM: 11.4
Samples: 6
Max nTPM: 21.5
Min nTPM: 7.0
P10809_1011
9.3
P10809_1029
7.2
P10809_1048
21.5
P10809_1067
7.0
P10809_1091
12.0
P10809_1104
11.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 39.2
Samples: 4
Max nTPM: 40.9
Min nTPM: 37.5
RHH5310_R3677
37.5
RHH5218_R3590
39.7
RHH5247_R3619
40.9
RHH5276_R3648
38.5
Naive B-cell nTPM: 29.8
Samples: 4
Max nTPM: 31.4
Min nTPM: 28.1
RHH5308_R3675
31.4
RHH5216_R3588
28.1
RHH5245_R3617
29.7
RHH5274_R3646
30.0
Non-switched memory B-cell nTPM: 33.2
Samples: 4
Max nTPM: 39.9
Min nTPM: 28.0
RHH5309_R3676
28.0
RHH5217_R3589
30.7
RHH5246_R3618
39.9
RHH5275_R3647
34.1
Plasmablast nTPM: 91.0
Samples: 4
Max nTPM: 123.8
Min nTPM: 60.8
RHH5312_R3679
82.2
RHH5220_R3592
60.8
RHH5249_R3621
97.0
RHH5278_R3650
123.8
Switched memory B-cell nTPM: 37.8
Samples: 4
Max nTPM: 45.1
Min nTPM: 21.8
RHH5311_R3678
21.8
RHH5219_R3591
43.3
RHH5248_R3620
40.8
RHH5277_R3649
45.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.2
Schmiedel sample id
TPM
Naive B-cell TPM: 28.2
Samples: 91
Max TPM: 41.4
Min TPM: 18.0
B_CELL_NAIVE_1
41.4
B_CELL_NAIVE_2
39.4
B_CELL_NAIVE_3
38.5
B_CELL_NAIVE_4
37.7
B_CELL_NAIVE_5
37.0
B_CELL_NAIVE_6
36.7
B_CELL_NAIVE_7
36.5
B_CELL_NAIVE_8
35.7
B_CELL_NAIVE_9
35.5
B_CELL_NAIVE_10
35.1
B_CELL_NAIVE_11
34.8
B_CELL_NAIVE_12
34.6
B_CELL_NAIVE_13
34.4
B_CELL_NAIVE_14
33.6
B_CELL_NAIVE_15
33.6
B_CELL_NAIVE_16
32.9
B_CELL_NAIVE_17
32.8
B_CELL_NAIVE_18
32.4
B_CELL_NAIVE_19
32.0
B_CELL_NAIVE_20
31.0
B_CELL_NAIVE_21
30.9
B_CELL_NAIVE_22
30.6
B_CELL_NAIVE_23
30.4
B_CELL_NAIVE_24
30.3
B_CELL_NAIVE_25
30.3
B_CELL_NAIVE_26
30.3
B_CELL_NAIVE_27
30.2
B_CELL_NAIVE_28
30.1
B_CELL_NAIVE_29
29.9
B_CELL_NAIVE_30
29.6
B_CELL_NAIVE_31
29.6
B_CELL_NAIVE_32
29.5
B_CELL_NAIVE_33
29.5
B_CELL_NAIVE_34
29.3
B_CELL_NAIVE_35
29.2
B_CELL_NAIVE_36
29.1
B_CELL_NAIVE_37
28.8
B_CELL_NAIVE_38
28.5
B_CELL_NAIVE_39
28.3
B_CELL_NAIVE_40
28.1
B_CELL_NAIVE_41
28.0
B_CELL_NAIVE_42
27.9
B_CELL_NAIVE_43
27.7
B_CELL_NAIVE_44
27.7
B_CELL_NAIVE_45
27.4
B_CELL_NAIVE_46
27.3
B_CELL_NAIVE_47
27.2
B_CELL_NAIVE_48
27.2
B_CELL_NAIVE_49
26.9
B_CELL_NAIVE_50
26.6
B_CELL_NAIVE_51
26.5
B_CELL_NAIVE_52
26.4
B_CELL_NAIVE_53
26.4
B_CELL_NAIVE_54
26.4
B_CELL_NAIVE_55
26.3
B_CELL_NAIVE_56
26.1
B_CELL_NAIVE_57
25.9
B_CELL_NAIVE_58
25.8
B_CELL_NAIVE_59
25.8
B_CELL_NAIVE_60
25.6
B_CELL_NAIVE_61
25.6
B_CELL_NAIVE_62
25.6
B_CELL_NAIVE_63
25.3
B_CELL_NAIVE_64
25.2
B_CELL_NAIVE_65
25.1
B_CELL_NAIVE_66
25.1
B_CELL_NAIVE_67
24.8
B_CELL_NAIVE_68
24.8
B_CELL_NAIVE_69
24.7
B_CELL_NAIVE_70
24.4
B_CELL_NAIVE_71
24.3
B_CELL_NAIVE_72
24.2
B_CELL_NAIVE_73
24.2
B_CELL_NAIVE_74
24.2
B_CELL_NAIVE_75
24.1
B_CELL_NAIVE_76
24.1
B_CELL_NAIVE_77
24.0
B_CELL_NAIVE_78
24.0
B_CELL_NAIVE_79
23.9
B_CELL_NAIVE_80
23.7
B_CELL_NAIVE_81
23.4
B_CELL_NAIVE_82
23.3
B_CELL_NAIVE_83
22.6
B_CELL_NAIVE_84
22.3
B_CELL_NAIVE_85
22.1
B_CELL_NAIVE_86
21.9
B_CELL_NAIVE_87
21.6
B_CELL_NAIVE_88
21.0
B_CELL_NAIVE_89
20.9
B_CELL_NAIVE_90
20.2
B_CELL_NAIVE_91
18.0
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The Human Protein Atlas project is funded
