A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.1
nTPM
Monaco:
28.2
nTPM
Schmiedel:
12.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.1
HPA sample
nTPM
Classical monocyte nTPM: 8.1
Samples: 6
Max nTPM: 10.5
Min nTPM: 6.2
P10809_1003
8.1
P10809_1020
10.5
P10809_1039
8.7
P10809_1058
6.7
P10809_1080
8.3
P10809_1107
6.2
Intermediate monocyte nTPM: 5.7
Samples: 6
Max nTPM: 11.2
Min nTPM: 1.6
P10809_1004
6.6
P10809_1023
3.0
P10809_1042
6.1
P10809_1061
1.6
P10809_1081
11.2
P10809_1108
5.7
Non-classical monocyte nTPM: 5.2
Samples: 5
Max nTPM: 8.0
Min nTPM: 0.1
P10809_1005
5.1
P10809_1053
7.6
P10809_1072
0.1
P10809_1082
5.2
P10809_1109
8.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.2
Monaco sample
nTPM
Classical monocyte nTPM: 28.2
Samples: 4
Max nTPM: 37.5
Min nTPM: 21.6
RHH5313_R3680
29.4
RHH5221_R3593
21.6
RHH5250_R3622
24.3
RHH5279_R3651
37.5
Intermediate monocyte nTPM: 17.4
Samples: 4
Max nTPM: 27.5
Min nTPM: 8.1
RHH5314_R3681
19.7
RHH5222_R3594
14.4
RHH5251_R3623
8.1
RHH5280_R3652
27.5
Non-classical monocyte nTPM: 27.4
Samples: 4
Max nTPM: 32.9
Min nTPM: 25.1
RHH5315_R3682
32.9
RHH5223_R3595
25.3
RHH5252_R3624
26.1
RHH5281_R3653
25.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.8
Schmiedel sample id
TPM
Classical monocyte TPM: 12.5
Samples: 91
Max TPM: 17.7
Min TPM: 8.9
MONOCYTES_1
17.7
MONOCYTES_2
16.5
MONOCYTES_3
16.4
MONOCYTES_4
16.3
MONOCYTES_5
16.2
MONOCYTES_6
15.9
MONOCYTES_7
15.6
MONOCYTES_8
15.4
MONOCYTES_9
15.2
MONOCYTES_10
15.1
MONOCYTES_11
15.1
MONOCYTES_12
15.0
MONOCYTES_13
14.9
MONOCYTES_14
14.6
MONOCYTES_15
14.2
MONOCYTES_16
14.1
MONOCYTES_17
13.9
MONOCYTES_18
13.9
MONOCYTES_19
13.7
MONOCYTES_20
13.7
MONOCYTES_21
13.7
MONOCYTES_22
13.7
MONOCYTES_23
13.7
MONOCYTES_24
13.5
MONOCYTES_25
13.5
MONOCYTES_26
13.5
MONOCYTES_27
13.4
MONOCYTES_28
13.4
MONOCYTES_29
13.3
MONOCYTES_30
13.2
MONOCYTES_31
13.2
MONOCYTES_32
13.2
MONOCYTES_33
13.1
MONOCYTES_34
13.1
MONOCYTES_35
13.0
MONOCYTES_36
12.9
MONOCYTES_37
12.9
MONOCYTES_38
12.7
MONOCYTES_39
12.7
MONOCYTES_40
12.7
MONOCYTES_41
12.7
MONOCYTES_42
12.6
MONOCYTES_43
12.6
MONOCYTES_44
12.5
MONOCYTES_45
12.4
MONOCYTES_46
12.4
MONOCYTES_47
12.4
MONOCYTES_48
12.3
MONOCYTES_49
12.2
MONOCYTES_50
12.2
MONOCYTES_51
12.1
MONOCYTES_52
12.1
MONOCYTES_53
12.0
MONOCYTES_54
11.9
MONOCYTES_55
11.8
MONOCYTES_56
11.8
MONOCYTES_57
11.8
MONOCYTES_58
11.7
MONOCYTES_59
11.7
MONOCYTES_60
11.7
MONOCYTES_61
11.7
MONOCYTES_62
11.5
MONOCYTES_63
11.4
MONOCYTES_64
11.4
MONOCYTES_65
11.3
MONOCYTES_66
11.3
MONOCYTES_67
11.2
MONOCYTES_68
11.1
MONOCYTES_69
11.1
MONOCYTES_70
11.1
MONOCYTES_71
11.0
MONOCYTES_72
11.0
MONOCYTES_73
11.0
MONOCYTES_74
11.0
MONOCYTES_75
10.9
MONOCYTES_76
10.6
MONOCYTES_77
10.5
MONOCYTES_78
10.5
MONOCYTES_79
10.3
MONOCYTES_80
10.3
MONOCYTES_81
10.3
MONOCYTES_82
10.0
MONOCYTES_83
9.9
MONOCYTES_84
9.8
MONOCYTES_85
9.8
MONOCYTES_86
9.8
MONOCYTES_87
9.7
MONOCYTES_88
9.4
MONOCYTES_89
9.4
MONOCYTES_90
9.3
MONOCYTES_91
8.9
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Non-classical monocyte TPM: 12.8
Samples: 90
Max TPM: 22.7
Min TPM: 8.4
M2_1
22.7
M2_2
19.5
M2_3
18.8
M2_4
18.4
M2_5
17.5
M2_6
17.4
M2_7
17.4
M2_8
17.4
M2_9
17.3
M2_10
17.2
M2_11
16.2
M2_12
16.0
M2_13
15.6
M2_14
15.5
M2_15
15.4
M2_16
15.2
M2_17
15.0
M2_18
14.8
M2_19
14.8
M2_20
14.7
M2_21
14.6
M2_22
14.5
M2_23
14.3
M2_24
14.1
M2_25
13.9
M2_26
13.8
M2_27
13.5
M2_28
13.3
M2_29
13.3
M2_30
13.1
M2_31
13.1
M2_32
13.1
M2_33
12.9
M2_34
12.9
M2_35
12.9
M2_36
12.8
M2_37
12.7
M2_38
12.7
M2_39
12.6
M2_40
12.6
M2_41
12.5
M2_42
12.4
M2_43
12.4
M2_44
12.4
M2_45
12.4
M2_46
12.4
M2_47
12.2
M2_48
12.2
M2_49
12.1
M2_50
12.1
M2_51
12.1
M2_52
12.0
M2_53
11.9
M2_54
11.9
M2_55
11.8
M2_56
11.7
M2_57
11.7
M2_58
11.6
M2_59
11.6
M2_60
11.6
M2_61
11.5
M2_62
11.5
M2_63
11.3
M2_64
11.2
M2_65
11.2
M2_66
11.1
M2_67
11.1
M2_68
11.1
M2_69
10.8
M2_70
10.4
M2_71
10.4
M2_72
10.4
M2_73
10.4
M2_74
10.3
M2_75
10.3
M2_76
10.3
M2_77
10.3
M2_78
10.2
M2_79
10.2
M2_80
10.2
M2_81
10.1
M2_82
10.1
M2_83
10.1
M2_84
9.9
M2_85
9.7
M2_86
9.6
M2_87
9.5
M2_88
9.1
M2_89
9.0
M2_90
8.4
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